ArticleNucleic acids research2012
Minimotif Miner 3.0: database expansion and significantly improved reduction of false-positive predictions from consensus sequences.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Evolutionarily conserved short linear motifs drive actin filament binding.Nature cell biology · 2026Article
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- Pathogen Moonlighting Proteins: From Ancestral Key Metabolic Enzymes to Virulence Factors.Microorganisms · 2021Article
- Article
- The carboxy-terminus, a key regulator of protein function.Critical reviews in biochemistry and molecular biology · 2019Review
- The predictive performance of short-linear motif features in the prediction of calmodulin-binding proteins.BMC bioinformatics · 2018Article
- Human Cytomegalovirus UL135 Interacts with Host Adaptor Proteins To Regulate Epidermal Growth Factor Receptor and Reactivation from Latency.Journal of virology · 2018Article
- A Prominent Role of the Human Cytomegalovirus UL8 Glycoprotein in Restraining Proinflammatory Cytokine Production by Myeloid Cells at Late Times during Infection.Journal of virology · 2018Article
- Minimotif Miner 4: a million peptide minimotifs and counting.Nucleic acids research · 2018Article
- Article
- Minimotifs dysfunction is pervasive in neurodegenerative disorders.Alzheimer's & dementia (New York, N. Y.) · 2018Article
- LMDIPred: A web-server for prediction of linear peptide sequences binding to SH3, WW and PDZ domains.PloS one · 2018Article
- Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway.PLoS computational biology · 2017Article
- SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions.Nucleic acids research · 2017Article
- A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses.Virus genes · 2017Article
- The minimotif synthesis hypothesis for the origin of life.Journal of translational science · 2016Article
- The Functional Human C-Terminome.PloS one · 2016Article
- Shetti, a simple tool to parse, manipulate and search large datasets of sequences.Microbial genomics · 2015Article
- Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.Nucleic acids research · 2015Article
- Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites.Frontiers in bioengineering and biotechnology · 2015Review
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Authors and funding
14 authors.
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Abstract
Minimotif Miner (MnM available at http://minimotifminer.org or http://mnm.engr.uconn.edu) is an online database for identifying new minimotifs in protein queries. Minimotifs are short contiguous peptide sequences that have a known function in at least one protein. Here we report the third release of the MnM database which has now grown 60-fold to approximately 300,000 minimotifs. Since short minimotifs are by their nature not very complex we also summarize a new set of false-positive filters and linear regression scoring that vastly enhance minimotif prediction accuracy on a test data set. This online database can be used to predict new functions in proteins and causes of disease.
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