Evidence map›Paper›PMID 22144481›Full record

ArticleInfection and immunity2012

Use of recombinase-based in vivo expression technology to characterize Enterococcus faecalis gene expression during infection identifies in vivo-expressed antisense RNAs and implicates the protease Eep in pathogenesis.

Kristi L Frank, Aaron M T Barnes, Suzanne M Grindle, Dawn A Manias, Patrick M Schlievert, Gary M Dunny

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 62 citations in OpenAlex.

  1. Insights into ecology, pathogenesis, and biofilm formation ofMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  2. Review
  3. Article
  4. An Overview of the Factors Involved in Biofilm Production by theInternational journal of molecular sciences · 2023
    Review
  5. Review
  6. Disruption of theJournal of bacteriology · 2022
    Article
  7. Microorganisms · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Identification ofMicroorganisms · 2021
    Article
  13. Enterococcal Endocarditis: Hiding in Plain Sight.Frontiers in cellular and infection microbiology · 2021
    Review
  14. FEMS microbes · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. Comparative genomics of globalMicrobial genomics · 2020
    Article
  19. Biofilm-associated infection by enterococci.Nature reviews. Microbiology · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kristi L FrankDepartment of Microbiology, University of Minnesota Medical School, Minneapolis, Minnesota, USA. fran0616@umn.edu
Aaron M T Barnes
Suzanne M Grindle
Dawn A Manias
Patrick M Schlievert
Gary M Dunny
University of Minnesota Medical Center · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008244 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SHIMIZU, YOJI · 1988 to 2024
$13.6M
MINNESOTA PAIN RESEARCH TRAINING PROGRAMT32DE007288 · NIDCR · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HERZBERG, MARK C · 1996 to 2011
$8.8M
Biofilms and Enterococcus faecalis BiologyR01AI058134 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DUNNY, GARY M · 2005 to 2015
$3.6M
Enterococcus faecalis Gene Expression in Host EnvironmentsF32AI082881 · NIAID · UNIVERSITY OF MINNESOTA · PI FRANK, KRISTI L · 2009 to 2009
$43k
NIAID NIH HHS F32 AI082881NIAID NIH HHS F32AI082881NIAID NIH HHS R01 AI058134NIAID NIH HHS R01AI58134NIDCR NIH HHS T32 DE007288NIDCR NIH HHS T32DE007288NIGMS NIH HHS T32 GM008244NIGMS NIH HHS T32GM008244PHS HHS HHSN266200400042C
6 · The paper itself

Abstract

Enterococcus faecalis is a member of the mammalian gastrointestinal microflora that has become a leading cause of nosocomial infections over the past several decades. E. faecalis must be able to adapt its physiology based on its surroundings in order to thrive in a mammalian host as both a commensal and a pathogen. We employed recombinase-based in vivo expression technology (RIVET) to identify promoters on the E. faecalis OG1RF chromosome that were specifically activated during the course of infection in a rabbit subdermal abscess model. The RIVET screen identified 249 putative in vivo-activated loci, over one-third of which are predicted to generate antisense transcripts. Three predicted antisense transcripts were detected in in vitro- and in vivo-grown cells, providing the first evidence of in vivo-expressed antisense RNAs in E. faecalis. Deletions in the in vivo-activated genes that encode glutamate 5-kinase (proB [EF0038]), the transcriptional regulator EbrA (ebrA [EF1809]), and the membrane metalloprotease Eep (eep [EF2380]) did not hinder biofilm formation in in vitro assays. In a rabbit model of endocarditis, the ΔebrA strain was fully virulent, the ΔproB strain was slightly attenuated, and the Δeep strain was severely attenuated. The Δeep virulence defect could be complemented by the expression of the wild-type gene in trans. Microscopic analysis of early Δeep biofilms revealed an abundance of small cellular aggregates that were not observed in wild-type biofilms. This work illustrates the use of a RIVET screen to provide information about the temporal activation of genes during infection, resulting in the identification and confirmation of a new virulence determinant in an important pathogen.

Indexed as

AbscessAnimalsBacterial ProteinsBiofilmsEndocarditis, BacterialEnterococcus faecalisGene Expression Regulation, BacterialGenetic TechniquesGram-Positive Bacterial InfectionsMembrane ProteinsRabbitsRecombinasesRNA, AntisenseRNA, BacterialBacterial ProteinsEep protein, Enterococcus faecalisMembrane ProteinsRecombinasesRNA, AntisenseRNA, Bacterial

Identifiers

PMID22144481
PMCPMC3264308
OpenAlexW2003080181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.