Evidence map›Paper›PMID 22144480›Full record

ArticleInfection and immunity2012

Effects of amino acid supplementation on porin expression and ToxR levels in Vibrio cholerae.

Alexandra R Mey, Stephanie A Craig, Shelley M Payne

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Connections betweenInfection and immunity · 2026
    Article
  3. mBio · 2024
    Article
  4. Article
  5. Structural Insights into Regulation of Vibrio Virulence Gene Networks.Advances in experimental medicine and biology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. σMolecular microbiology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Indole Inhibits ToxR Regulon Expression inInfection and immunity · 2019
    Article
  18. Environmental role of pathogenic traits inJournal of bacteriology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alexandra R MeySection of Molecular Genetics and Microbiology, and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, USA. armey@mail.utexas.edu
Stephanie A Craig
Shelley M Payne
The University of Texas at Austin · US

Funding

Characterization of the ferrous iron transporter Feo in Vibrio choleraeR01AI091957 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI PAYNE, SHELLEY M. · 2011 to 2021
$3.9M
V. cholerae iron transport mechanisms and pathogenesisR01AI050669 · NIAID · UNIVERSITY OF TEXAS AUSTIN · PI PAYNE, SHELLEY M. · 2002 to 2006
$1.5M
Iron transport and its role in pathogenesis of Vibrio choleraeR56AI050669 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI PAYNE, SHELLEY M. · 2008 to 2009
$742k
NIAID NIH HHS AI091957NIAID NIH HHS AI50669NIAID NIH HHS R01 AI050669NIAID NIH HHS R01 AI091957NIAID NIH HHS R56 AI050669
6 · The paper itself

Abstract

Vibrio cholerae responds to environmental changes by altering the protein composition of its outer membrane. In rich medium, V. cholerae expresses almost exclusively the outer membrane porin OmpU, whereas in minimal medium, OmpT is the dominant porin. The supplementation of a minimal medium with a mixture of asparagine, arginine, glutamic acid, and serine (NRES) promotes OmpU production and OmpT repression at levels similar to those seen with rich media. Here we show that the altered Omp profile is not due to an increase in the growth rate in the presence of supplemental amino acids but requires the addition of specific amino acids. The effects of the NRES mix on Omp production were mediated by ToxR, a known regulator of omp gene expression. No changes in the Omp profile were detected in a toxR mutant. Supplementation with the NRES mix resulted in significantly higher levels of ToxR, and the elevated ToxR levels were sufficient to cause a switch in Omp synthesis. The increase in the level of the ToxR protein correlated with an increase in toxR mRNA levels and was observed only when toxR was expressed from its native promoter. ToxS, which is required for ToxR activity, was necessary for NRES-mediated omp gene regulation but not for the increase in ToxR levels. The growth of V. cholerae in the presence of bile acids also resulted in Omp switching, and this required ToxR. However, unlike the NRES mix, bile acids did not increase either ToxR protein or toxR mRNA levels, suggesting a different mechanism of omp gene regulation by bile than that by amino acids.

Indexed as

Adhesins, BacterialAmino AcidsAnimalsBacterial ProteinsBile Acids and SaltsChemotaxisCulture MediaDNA-Binding ProteinsGene Expression Regulation, BacterialIntestinal MucosaMucinsPorinsPromoter Regions, GeneticRabbitsRNA, BacterialRNA, MessengerAdhesins, BacterialAmino AcidsBacterial ProteinsBile Acids and SaltsCulture MediaDNA-Binding ProteinsMucinsompT protein, bacteriaOmpU protein, Vibrio choleraePorinsRNA, BacterialRNA, MessengertoxR protein, Vibrio choleraeTranscription Factors

Identifiers

PMID22144480
PMCPMC3264288
OpenAlexW2122086668

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.