Evidence map›Paper›PMID 22143781›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Dynamic model of flexible phytoplankton nutrient uptake.

Juan A Bonachela, Michael Raghib, Simon A Levin

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  3. Review
  4. Article
  5. GLUT1 production in cancer cells: a tragedy of the commons.NPJ systems biology and applications · 2022
    Article
  6. Article
  7. Article
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  9. Article
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  12. Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Role of carbon allocation efficiency in the temperature dependence of autotroph growth rates.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors.

Juan A BonachelaDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544-1003, USA. jabo@princeton.edu
Michael Raghib
Simon A Levin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metabolic machinery of marine microbes can be remarkably plastic, allowing organisms to persist under extreme nutrient limitation. With some exceptions, most theoretical approaches to nutrient uptake in phytoplankton are largely dominated by the classic Michaelis-Menten (MM) uptake functional form, whose constant parameters cannot account for the observed plasticity in the uptake apparatus. Following seminal ideas by earlier researchers, we propose a simple cell-level model based on a dynamic view of the uptake process whereby the cell can regulate the synthesis of uptake proteins in response to changes in both internal and external nutrient concentrations. In our flexible approach, the maximum uptake rate and nutrient affinity increase monotonically as the external nutrient concentration decreases. For low to medium nutrient availability, our model predicts uptake and growth rates larger than the classic MM counterparts, while matching the classic MM results for large nutrient concentrations. These results have important consequences for global coupled models of ocean circulation and biogeochemistry, which lack this regulatory mechanism and are thus likely to underestimate phytoplankton abundances and growth rates in oligotrophic regions of the ocean.

Indexed as

Cell MembraneDiffusionEcologyEvolution, MolecularFoodKineticsMetabolismModels, BiologicalModels, ChemicalNitrogenPhenotypePhytoplanktonReproducibility of ResultsNitrogen

Identifiers

PMID22143781
PMCPMC3251133

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.