Evidence map›Paper›PMID 22143771›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Energy landscape of the reactions governing the Na+ deeply occluded state of the Na+/K+-ATPase in the giant axon of the Humboldt squid.

Juan P Castillo, Daniela De Giorgis, Daniel Basilio, David C Gadsby, Joshua J C Rosenthal, Ramon Latorre, Miguel Holmgren, Francisco Bezanilla

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Molecular determinants for cold adaptation in an Antarctic NaProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Article
  5. NaMolecules (Basel, Switzerland) · 2021
    Review
  6. Article
  7. Review
  8. Mechanisms for achieving high speed and efficiency in biomolecular machines.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Juan P CastilloLaboratorio de Fisiologia Celular, Facultad de Ciencias, Universidad de Chile, Montemar 2366103, Chile.
Daniela De Giorgis
Daniel Basilio
David C Gadsby
Joshua J C Rosenthal
Ramon Latorre
Miguel Holmgren
Francisco Bezanilla
University of Chile · CLUniversity of Valparaíso · CLCornell University · USNational Institutes of Health · USUniversity of Puerto Rico, Medical Sciences Campus · PR

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2010 to 2017
$31.9M
Structure and Function of Membrane ProteinsZIANS002993 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI HOLMGREN, MIGUEL · 2009 to 2025
$24.0M
The Electrophysiological Studies of Voltage Gated ChannelsR01GM030376 · NIGMS · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 1985 to 2025
$9.1M
ELECTROPHYSIOLOGICAL STUDIES OF VOLTAGE GATED CHANNELSR37GM030376 · NIGMS · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 1999 to 2008
$3.7M
NA/K PUMP CURRENT IN ISOLATED HEART CELLSR01HL036783 · NHLBI · ROCKEFELLER UNIVERSITY · PI GADSBY, DAVID C · 1987 to 2011
$3.3M
Regulation of the Na/K Pump by RNA EditingR01NS064259 · NINDS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI ROSENTHAL, JOSHUA J.C. · 2010 to 2014
$1.5M
Charge translocation by the sodium-potassium pump in the giant axon of the HumbolR03TW008351 · FIC · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 2009 to 2011
$166k
FIC NIH HHS R03 TW008351Intramural NIH HHS ZIA NS002993NHLBI NIH HHS R01 HL036783NHLBI NIH HHS R01HL36783NIGMS NIH HHS R01 GM030376NIGMS NIH HHS R01GM030376NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54GM087519NINDS NIH HHS R01 NS064259NINDS NIH HHS R01NS64259
6 · The paper itself

Abstract

The Na(+)/K(+) pump is a nearly ubiquitous membrane protein in animal cells that uses the free energy of ATP hydrolysis to alternatively export 3Na(+) from the cell and import 2K(+) per cycle. This exchange of ions produces a steady-state outwardly directed current, which is proportional in magnitude to the turnover rate. Under certain ionic conditions, a sudden voltage jump generates temporally distinct transient currents mediated by the Na(+)/K(+) pump that represent the kinetics of extracellular Na(+) binding/release and Na(+) occlusion/deocclusion transitions. For many years, these events have escaped a proper thermodynamic treatment due to the relatively small electrical signal. Here, taking the advantages offered by the large diameter of the axons from the squid Dosidicus gigas, we have been able to separate the kinetic components of the transient currents in an extended temperature range and thus characterize the energetic landscape of the pump cycle and those transitions associated with the extracellular release of the first Na(+) from the deeply occluded state. Occlusion/deocclusion transition involves large changes in enthalpy and entropy as the ion is exposed to the external milieu for release. Binding/unbinding is substantially less costly, yet larger than predicted for the energetic cost of an ion diffusing through a permeation pathway, which suggests that ion binding/unbinding must involve amino acid side-chain rearrangements at the site.

Indexed as

Adenosine TriphosphateAnimalsAxonsDecapodiformesDiffusionElectrophysiologyHydrolysisIonsKineticsProtein BindingSodiumSodium-Potassium-Exchanging ATPaseTemperatureThermodynamicsAdenosine TriphosphateIonsSodiumSodium-Potassium-Exchanging ATPase

Identifiers

PMID22143771
PMCPMC3251152
OpenAlexW2033442065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.