ArticleNucleic acids research2012
CharProtDB: a database of experimentally characterized protein annotations.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
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- GapMind: Automated Annotation of Amino Acid Biosynthesis.mSystems · 2020Article
- The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.Briefings in bioinformatics · 2015Article
- Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters.Standards in genomic sciences · 2015Article
- Structured RNAs and synteny regions in the pig genome.BMC genomics · 2014Article
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- TIGRFAMs and Genome Properties in 2013.Nucleic acids research · 2013Article
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- Draft genome sequence of Staphylococcus massiliensis strain 5402776T.Journal of bacteriology · 2012Article
- Draft genome sequences of Actinomyces timonensis strain 7400942T and its prophage.Journal of bacteriology · 2012Article
- Draft genome sequence of Tsukamurella sp. strain 1534.Journal of bacteriology · 2012Article
- Draft genome sequence of Brevibacterium massiliense strain 541308T.Journal of bacteriology · 2012Article
- Draft genome sequence of Actinomyces massiliensis strain 4401292T.Journal of bacteriology · 2012Article
- The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.Nucleic acids research · 2012Article
- Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.PLoS neglected tropical diseases · 2012Article
- Curated BLAST for Genomes.mSystemsArticle
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9 authors.
Funding
Abstract
CharProtDB (http://www.jcvi.org/charprotdb/) is a curated database of biochemically characterized proteins. It provides a source of direct rather than transitive assignments of function, designed to support automated annotation pipelines. The initial data set in CharProtDB was collected through manual literature curation over the years by analysts at the J. Craig Venter Institute (JCVI) [formerly The Institute of Genomic Research (TIGR)] as part of their prokaryotic genome sequencing projects. The CharProtDB has been expanded by import of selected records from publicly available protein collections whose biocuration indicated direct rather than homology-based assignment of function. Annotations in CharProtDB include gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession. Each annotation is referenced with the source; ideally a journal reference, or, if imported and lacking one, the original database source.
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