Evidence map›Paper›PMID 22139419›Full record

SynthesisNature2011

New gene functions in megakaryopoiesis and platelet formation.

Christian Gieger, Aparna Radhakrishnan, Ana Cvejic, Weihong Tang, Eleonora Porcu, Giorgio Pistis, Jovana Serbanovic-Canic, Ulrich Elling, Alison H Goodall, Yann Labrune and 153 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 233 papers, 16 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
233citing papers in PubMed, 16 pooled it
19.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

233 citing papers in PubMed, 16 syntheses or guidelines pooled it, 423 citations in OpenAlex.

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  11. Pleiotropic genes for metabolic syndrome and inflammation.Molecular genetics and metabolism · 2014
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173 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

163 authors at 20 institutions in 13 countries.

Christian GiegerInstitute of Genetic Epidemiology, Helmholtz Zentrum München, German Research Center for Environmental Health, Ingolstädter Landstr 1, 85764 Neuherberg, Germany. christian.gieger@helmholtz-muenchen.de
Aparna Radhakrishnan
Ana Cvejic
Weihong Tang
Eleonora Porcu
Giorgio Pistis
Jovana Serbanovic-Canic
Ulrich Elling
Alison H Goodall
Yann Labrune
Lorna M Lopez
Reedik Mägi
Stuart Meacham
Yukinori Okada
Nicola Pirastu
Rossella Sorice
Alexander Teumer
Katrin Voss
Weihua Zhang
Ramiro Ramirez-Solis
Joshua C Bis
David Ellinghaus
Martin Gögele
Jouke-Jan Hottenga
Claudia Langenberg
Peter Kovacs
Paul F O'Reilly
So-Youn Shin
Tõnu Esko
Jaana Hartiala
Stavroula Kanoni
Federico Murgia
Afshin Parsa
Jonathan Stephens
Pim van der Harst
C Ellen van der Schoot
Hooman Allayee
Antony Attwood
Beverley Balkau
François Bastardot
Saonli Basu
Sebastian E Baumeister
Ginevra Biino
Lorenzo Bomba
Amélie Bonnefond
François Cambien
John C Chambers
Francesco Cucca
Pio D'Adamo
Gail Davies
Rudolf A de Boer
Eco J C de Geus
Angela Döring
Paul Elliott
Jeanette Erdmann
David M Evans
Mario Falchi
Wei Feng
Aaron R Folsom
Ian H Frazer
Quince D Gibson
Nicole L Glazer
Chris Hammond
Anna-Liisa Hartikainen
Susan R Heckbert
Christian Hengstenberg
Micha Hersch
Thomas Illig
Ruth J F Loos
Jennifer Jolley
Kay Tee Khaw
Brigitte Kühnel
Marie-Christine Kyrtsonis
Vasiliki Lagou
Heather Lloyd-Jones
Thomas Lumley
Massimo Mangino
Andrea Maschio
Irene Mateo Leach
Barbara McKnight
Yasin Memari
Braxton D Mitchell
Grant W Montgomery
Yusuke Nakamura
Matthias Nauck
Gerjan Navis
Ute Nöthlings
Ilja M Nolte
David J Porteous
Anneli Pouta
Peter P Pramstaller
Janne Pullat
Susan M Ring
Jerome I Rotter
Daniela Ruggiero
Aimo Ruokonen
Cinzia Sala
Nilesh J Samani
Jennifer Sambrook
David Schlessinger
Stefan Schreiber
Heribert Schunkert
James Scott
Nicholas L Smith
Harold Snieder
John M Starr
Michael Stumvoll
Atsushi Takahashi
W H Wilson Tang
Kent Taylor
Albert Tenesa
Swee Lay Thein
Anke Tönjes
Manuela Uda
Sheila Ulivi
Dirk J van Veldhuisen
Peter M Visscher
Uwe Völker
H-Erich Wichmann
Kerri L Wiggins
Gonneke Willemsen
Tsun-Po Yang
Jing Hua Zhao
Paavo Zitting
John R Bradley
George V Dedoussis
Paolo Gasparini
Stanley L Hazen
Andres Metspalu
Mario Pirastu
Alan R Shuldiner
L Joost van Pelt
Jaap-Jan Zwaginga
Dorret I Boomsma
Ian J Deary
Andre Franke
Philippe Froguel
Santhi K Ganesh
Marjo-Riitta Jarvelin
Nicholas G Martin
Christa Meisinger
Bruce M Psaty
Timothy D Spector
Nicholas J Wareham
Jan-Willem N Akkerman
Marina Ciullo
Panos Deloukas
Andreas Greinacher
Steve Jupe
Naoyuki Kamatani
Jyoti Khadake
Jaspal S Kooner
Josef Penninger
Inga Prokopenko
Derek Stemple
Daniela Toniolo
Lorenz Wernisch
Serena Sanna
Andrew A Hicks
Augusto Rendon
Manuel A Ferreira
Willem H Ouwehand
Nicole Soranzo
NHS Blood and Transplant · GBUniversity Medical Center Groningen · NLWellcome Sanger Institute · GBHelmholtz Zentrum München · DEUniversity of Washington · USInstitute of Genetic and Biomedical Research · ITKing's College London · GBUniversity of Edinburgh · GBAddenbrooke's Hospital · GBHammersmith Hospital · GBIRCCS Materno Infantile Burlo Garofolo · ITQIMR Berghofer Medical Research Institute · AUUniversity of Maryland, Baltimore · USUniversity of Minnesota · USVrije Universiteit Amsterdam · NLEurac Research · ITInstitute of Genetics and Biophysics · ITLeipzig University · DENIHR Cambridge Biomedical Research CentreRIKEN Center for Integrative Medical Sciences · JP

Funding

Institute for Clinical and Translational Research (UL1)UL1RR025005 · NCRR · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2007 to 2011
$75.8M
Structural Determinants Of Ceruloplasmin Inflammatory ActivityP01HL076491 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI PLOW, EDWARD FRANKLIN · 2004 to 2019
$27.3M
Genome-Wide Association Analysis in Essential Hypertension (FEHGAS study)R01HL086694 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ARAVINDA CHAKRAVARTI · 2007 to 2026
$21.2M
Zonulin Antibodies in Intestinal Permeabilitiy in IDDMM01RR016500 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI OSWALD, LYNN M · 2002 to 2009
$20.2M
Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Clinical Research Career Development (RMI)K12RR023250 · NCRR · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2005 to 2009
$13.3M
Regression of Atherosclerosis CoreP01HL098055 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI FISHER, EDWARD A · 2010 to 2014
$12.1M
Epidemiology of Venous Thrombosis & Pulmonary EmbolismR01HL059367 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI TANG, WEIHONG · 1998 to 2024
$11.8M
Genome-wide Search for CVD Gene-Environment InteractionsU01HL072515 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2002 to 2008
$11.2M
Gut Flora Metabolism of Dietary Phosphatidylcholine and CVDR01HL103866 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI HAZEN, STANLEY L · 2010 to 2023
$10.8M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
Austrian Science Fund FWF I 434Biotechnology and Biological Sciences Research Council BB/F019394/1British Heart Foundation RG/09/012/28096Chief Scientist Office CZB/4/505Chief Scientist Office ETM/55Medical Research Council G0000111Medical Research Council G0401527Medical Research Council G0601966Medical Research Council G0700704Medical Research Council G0700931Medical Research Council G0701120Medical Research Council G0701863Medical Research Council G0801056Medical Research Council G1000143Medical Research Council MC_U105260799Medical Research Council MC_U106179471Medical Research Council MC_U106188470NCRR NIH HHS K12 RR023250NCRR NIH HHS M01 RR016500NCRR NIH HHS U54 RR020278NCRR NIH HHS UL1 RR025005NHGRI NIH HHS P41 HG003751NHLBI NIH HHS N01 HC055015NHLBI NIH HHS N01 HC055016NHLBI NIH HHS N01 HC055018NHLBI NIH HHS N01 HC055019NHLBI NIH HHS N01 HC055020NHLBI NIH HHS N01 HC055021NHLBI NIH HHS N01 HC055022NHLBI NIH HHS N01 HC085079NHLBI NIH HHS P01 HL076491NHLBI NIH HHS P01 HL098055NHLBI NIH HHS R01 HL059367NHLBI NIH HHS R01 HL068986NHLBI NIH HHS R01 HL073410NHLBI NIH HHS R01 HL085251NHLBI NIH HHS R01 HL086694NHLBI NIH HHS R01 HL087641NHLBI NIH HHS R01 HL087679NHLBI NIH HHS R01 HL088119NHLBI NIH HHS R01 HL103866NHLBI NIH HHS R01 HL105756NHLBI NIH HHS U01 HL072515NHLBI NIH HHS U01 HL084756NIA NIH HHS R01 AG018728NICHD NIH HHS R01 HD042157NIDDK NIH HHS P30 DK072488NIGMS NIH HHS R01 GM053275NIGMS NIH HHS U01 GM074518NIMH NIH HHS RL1 MH083268Wellcome Trust 092731Wellcome Trust 098051Wellcome Trust WT077037/Z/05/ZWellcome Trust WT077047/Z/05/ZWellcome Trust WT082597/Z/07/Z
6 · The paper itself

Abstract

Platelets are the second most abundant cell type in blood and are essential for maintaining haemostasis. Their count and volume are tightly controlled within narrow physiological ranges, but there is only limited understanding of the molecular processes controlling both traits. Here we carried out a high-powered meta-analysis of genome-wide association studies (GWAS) in up to 66,867 individuals of European ancestry, followed by extensive biological and functional assessment. We identified 68 genomic loci reliably associated with platelet count and volume mapping to established and putative novel regulators of megakaryopoiesis and platelet formation. These genes show megakaryocyte-specific gene expression patterns and extensive network connectivity. Using gene silencing in Danio rerio and Drosophila melanogaster, we identified 11 of the genes as novel regulators of blood cell formation. Taken together, our findings advance understanding of novel gene functions controlling fate-determining events during megakaryopoiesis and platelet formation, providing a new example of successful translation of GWAS to function.

Indexed as

AnimalsBlood PlateletsCell SizeDrosophila melanogasterDrosophila ProteinsEuropeGene Expression ProfilingGene SilencingGenome, HumanGenome-Wide Association StudyHematopoiesisHumansMegakaryocytesPlatelet CountProtein Interaction MapsTranscription, GeneticDrosophila ProteinsZebrafish Proteins

Identifiers

PMID22139419
PMCPMC3335296
OpenAlexW2155766871

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.