Evidence map›Paper›PMID 22139082›Full record

ArticleOncogene2012

Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer.

W Liu, J Lindberg, G Sui, J Luo, L Egevad, T Li, C Xie, M Wan, S-T Kim, Z Wang and 15 more

Open access · greenAbstract read
In one paragraph

Article in Oncogene, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Molecular cancer research : MCR · 2021
    Article
  12. CHD2-Related CNS Pathologies.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Review
  20. Missense variants in the chromatin remodelerJournal of medical genetics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

W LiuCenter for Cancer Genomics, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
J Lindberg
G Sui
J Luo
L Egevad
T Li
C Xie
M Wan
S-T Kim
Z Wang
A R Turner
Z Zhang
J Feng
Y Yan
J Sun
G S Bova
C M Ewing
G Yan
M Gielzak
S D Cramer
R L Vessella
S L Zheng
H Grönberg
W B Isaacs
J Xu
Wake Forest University · USJohns Hopkins University · USKarolinska Institutet · SEKarolinska University Hospital · SEUniversity of Washington · USVan Andel Institute · US

Funding

Genetic Susceptibility for Prostate Cancer ProgressionR01CA112517 · NCI · JOHNS HOPKINS UNIVERSITY · PI ISAACS, WILLIAM B · 2005 to 2009
$2.0M
Genetics Variants in the Genome Predisposing to Aggressive PCaR01CA133009 · NCI · JOHNS HOPKINS UNIVERSITY · PI ISAACS, WILLIAM B, ZHENG, SIQUN L · 2009 to 2011
$1.8M
Interaction of germline and somatic changes in PCa progressionR01CA135008 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ISAACS, WILLIAM B, LIU, WENNUAN · 2009 to 2012
$1.5M
The role of germline and somatic DNA changes at 8q24 in PCa riskR01CA131338 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ISAACS, WILLIAM B, ZHENG, SIQUN L · 2009 to 2011
$1.5M
Tak1, a novel prostate cancer tumor suppressorR01CA129418 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI CRAMER, SCOTT D · 2009 to 2013
$1.5M
QTL mapping for genes regulating apoptosis capacityR01CA119069 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI XU, JIANFENG · 2006 to 2010
$1.2M
Global genetic and epigenetic approaches to progression of PCaR01CA133066 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KIM, JIN WOO, LIU, WENNUAN · 2009 to 2010
$1.1M
Cancer Cell Mechanical Profiling AnalysisR21CA208196 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAO, JIANYU · 2017 to 2018
$372k
NCI NIH HHS CA119069NCI NIH HHS CA131338NCI NIH HHS CA133066NCI NIH HHS CA135008NCI NIH HHS R01 CA112517NCI NIH HHS R01 CA119069NCI NIH HHS R01 CA129418NCI NIH HHS R01 CA131338NCI NIH HHS R01 CA133009NCI NIH HHS R01 CA133066NCI NIH HHS R01 CA135008NCI NIH HHS R21 CA208196PHS HHS 133009
6 · The paper itself

Abstract

A clearer definition of the molecular determinants that drive the development and progression of prostate cancer (PCa) is urgently needed. Efforts to map recurrent somatic deletions in the tumor genome, especially homozygous deletions (HODs), have provided important positional information in the search for cancer-causing genes. Analyzing HODs in the tumors of 244 patients from two independent cohorts and 22 PCa xenografts using high-resolution single-nucleotide polymorphism arrays, herein we report the identification of CHD1, a chromatin remodeler, as one of the most frequently homozygously deleted genes in PCa, second only to PTEN in this regard. The HODs observed in CHD1, including deletions affecting only internal exons of CHD1, were found to completely extinguish the expression of mRNA of this gene in PCa xenografts. Loss of this chromatin remodeler in clinical specimens is significantly associated with an increased number of additional chromosomal deletions, both hemi- and homozygous, especially on 2q, 5q and 6q. Together with the deletions observed in HEK293 cells stably transfected with CHD1 small hairpin RNA, these data suggest a causal relationship. Downregulation of Chd1 in mouse prostate epithelial cells caused dramatic morphological changes indicative of increased invasiveness, but did not result in transformation. Indicating a new role of CHD1, these findings collectively suggest that distinct CHD1-associated alterations of genomic structure evolve during and are required for the development of PCa.

Indexed as

Chromatin Assembly and DisassemblyGene DeletionAnimalsCell LineDNA-Binding ProteinsDNA HelicasesDown-RegulationHEK293 CellsHomozygoteHumansMaleMiceNeoplasm TransplantationOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideProstatic NeoplasmsCHD1 protein, humanDNA-Binding ProteinsDNA HelicasesPTEN PhosphohydrolasePTEN protein, humanRNA, MessengerRNA, Small Interfering

Identifiers

PMID22139082
PMCPMC3667348
OpenAlexW2053304050

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.