Evidence map›Paper›PMID 22138344›Full record

ArticleJournal of molecular biology2012

Salt bridges regulate both dimer formation and monomeric flexibility in HdeB and may have a role in periplasmic chaperone function.

Wenjian Wang, Tim Rasmussen, Amanda J Harding, Nuala A Booth, Ian R Booth, James H Naismith

Open access · hybridAbstract read
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Formation of Fibrils by the Periplasmic Molecular Chaperone HdeB fromInternational journal of molecular sciences · 2022
    Article
  2. Stress-Responsive Periplasmic Chaperones in Bacteria.Frontiers in molecular biosciences · 2021
    Review
  3. Article
  4. Acid-denatured small heat shock protein HdeA fromThe Journal of biological chemistry · 2019
    Article
  5. Review
  6. Article
  7. Article
  8. Comparative proteomics reveal distinct chaperone-client interactions in supporting bacterial acid resistance.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Article
  10. HdeB functions as an acid-protective chaperone in bacteria.The Journal of biological chemistry · 2015
    Article
  11. Article
  12. Chaperone activation by unfolding.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Wenjian WangBiomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife KY16 9ST, UK.
Tim Rasmussen
Amanda J Harding
Nuala A Booth
Ian R Booth
James H Naismith
University of Aberdeen · GBUniversity of St Andrews · GB

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust 077564Wellcome Trust 077564/B/05/Z
6 · The paper itself

Abstract

Escherichia coli and Gram-negative bacteria that live in the human gut must be able to tolerate rapid and large changes in environmental pH. Low pH irreversibly denatures and precipitates many bacterial proteins. While cytoplasmic proteins are well buffered against such swings, periplasmic proteins are not. Instead, it appears that some bacteria utilize chaperone proteins that stabilize periplasmic proteins, preventing their precipitation. Two highly expressed and related proteins, HdeA and HdeB, have been identified as acid-activated chaperones. The structure of HdeA is known and a mechanism for activation has been proposed. In this model, dimeric HdeA dissociates at low pH, and the exposed dimeric interface binds exposed hydrophobic surfaces of acid-denatured proteins, preventing their irreversible aggregation. We now report the structure and biophysical characterization of the HdeB protein. The monomer of HdeB shares a similar structure with HdeA, but its dimeric interface is different in composition and spatial location. We have used fluorescence to study the behavior of HdeB as pH is lowered, and like HdeA, it dissociates to monomers. We have identified one of the key intersubunit interactions that controls pH-induced monomerization. Our analysis identifies a structural interaction within the HdeB monomer that is disrupted as pH is lowered, leading to enhanced structural flexibility.

Indexed as

Protein MultimerizationChromatography, GelCircular DichroismCrystallography, X-RayEscherichia coliEscherichia coli ProteinsHydrogen-Ion ConcentrationModels, MolecularProtein ConformationSpectrum AnalysisEscherichia coli ProteinshdeB protein, E coli

Identifiers

PMID22138344
PMCPMC3299563
OpenAlexW2166026014

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.