Evidence map›Paper›PMID 22135347›Full record

ArticleGenetics2012

Transcriptional regulatory circuitries in the human pathogen Candida albicans involving sense--antisense interactions.

Ausaf Ahmad, Anatoliy Kravets, Elena Rustchenko

Abstract read
In one paragraph

Article in Genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Iranian journal of microbiology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ausaf AhmadDepartment of Pathology, University of Rochester Medical Center, Rochester, New York 14642, USA.
Anatoliy Kravets
Elena Rustchenko

Funding

Regulation and Gene Expression of Yeast Cytochrome cR01GM012702 · NIGMS · UNIVERSITY OF ROCHESTER · PI SHERMAN, FRED · 1985 to 2010
$4.3M
NIGMS NIH HHS GM12702NIGMS NIH HHS R01 GM012702
6 · The paper itself

Abstract

Candida albicans, a major human fungal pathogen, usually contains a diploid genome, but controls adaptation to a toxic alternative carbon source L-sorbose, by the reversible loss of one chromosome 5 (Ch5). We have previously identified multiple unique regions on Ch5 that repress the growth on sorbose. In one of the regions, the CSU51 gene determining the repressive property of the region was identified. We report here the identification of the CSU53 gene from a different region on Ch5. Most importantly, we find that CSU51 and CSU53 are associated with novel regulatory elements, ASUs, which are embedded within CSUs in an antisense configuration. ASUs act opposite to CSUs by enhancing the growth on sorbose. In respect to the CSU transcripts, the ASU long antisense transcripts are in lesser amounts, are completely overlapped, and are inversely related. ASUs interact with CSUs in natural CSU/ASU cis configurations, as well as when extra copies of ASUs are placed in trans to the CSU/ASU configurations. We suggest that ASU long embedded antisense transcripts modulate CSU sense transcripts.

Indexed as

Epistasis, GeneticTranscription, GeneticCandida albicansChromosome MappingChromosomes, FungalDNA Mutational AnalysisGene ExpressionGene Expression Regulation, FungalGene OrderGenes, FungalHumansOpen Reading FramesPhenotypeRNA, AntisenseRNA, FungalSorboseRNA, AntisenseRNA, FungalSorboseUntranslated Regions

Identifiers

PMID22135347
PMCPMC3276616

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.