ArticleNucleic acids research2012
miRNEST database: an integrative approach in microRNA search and annotation.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
23 citing papers in PubMed, 62 citations in OpenAlex.
- Association of uterine fibroids and pregnancy outcomes after ovarian stimulation-intrauterine insemination for unexplained infertility.Fertility and sterility · 2017Trial
- Role of non-coding RNAs in quality improvement of horticultural crops: computational tools, databases, and algorithms for identification and analysis.Functional & integrative genomics · 2025Review
- ASmiR: a machine learning framework for prediction of abiotic stress-specific miRNAs in plants.Functional & integrative genomics · 2023Article
- Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants.International journal of molecular sciences · 2022Review
- ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with PseudoInternational journal of molecular sciences · 2022Article
- AntiVIRmiR: A repository of host antiviral miRNAs and their expression along with experimentally validated viral miRNAs and their targets.Frontiers in genetics · 2022Article
- The role of miRNA in plant-virus interaction: a review.Molecular biology reports · 2021Review
- miRNomes involved in imparting thermotolerance to crop plants.3 Biotech · 2018Review
- Non-coding RNAs and plant male sterility: current knowledge and future prospects.Plant cell reports · 2018Review
- A comprehensive review of web-based resources of non-coding RNAs for plant science research.International journal of biological sciences · 2018Review
- A comprehensive view of the web-resources related to sericulture.Database : the journal of biological databases and curation · 2016Review
- MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants.Frontiers in plant science · 2016Review
- High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum.Parasites & vectors · 2015Article
- PNRD: a plant non-coding RNA database.Nucleic acids research · 2015Article
- Identification and validation of sugarcane streak mosaic virus-encoded microRNAs and their targets in sugarcane.Plant cell reports · 2014Article
- Article
- miRNEST 2.0: a database of plant and animal microRNAs.Nucleic acids research · 2014Article
- PMTED: a plant microRNA target expression database.BMC bioinformatics · 2013Article
- HuntMi: an efficient and taxon-specific approach in pre-miRNA identification.BMC bioinformatics · 2013Article
- MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting.Nucleic acids research · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Despite accumulating data on animal and plant microRNAs and their functions, existing public miRNA resources usually collect miRNAs from a very limited number of species. A lot of microRNAs, including those from model organisms, remain undiscovered. As a result there is a continuous need to search for new microRNAs. We present miRNEST (http://mirnest.amu.edu.pl), a comprehensive database of animal, plant and virus microRNAs. The core part of the database is built from our miRNA predictions conducted on Expressed Sequence Tags of 225 animal and 202 plant species. The miRNA search was performed based on sequence similarity and as many as 10,004 miRNA candidates in 221 animal and 199 plant species were discovered. Out of them only 299 have already been deposited in miRBase. Additionally, miRNEST has been integrated with external miRNA data from literature and 13 databases, which includes miRNA sequences, small RNA sequencing data, expression, polymorphisms and targets data as well as links to external miRNA resources, whenever applicable. All this makes miRNEST a considerable miRNA resource in a sense of number of species (544) that integrates a scattered miRNA data into a uniform format with a user-friendly web interface.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.