Evidence map›Paper›PMID 22130795›Full record

ArticleMolecular biology of the cell2012

Subtelomere-binding protein Tbf1 and telomere-binding protein Rap1 collaborate to inhibit localization of the Mre11 complex to DNA ends in budding yeast.

Kenzo Fukunaga, Yukinori Hirano, Katsunori Sugimoto

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Timeless protection of telomeres.Current genetics · 2016
    Review
  10. Retrotransposon-derived p53 binding sites enhance telomere maintenance and genome protection.BioEssays : news and reviews in molecular, cellular and developmental biology · 2016
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. DNA repair at telomeres: keeping the ends intact.Cold Spring Harbor perspectives in biology · 2013
    Review
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kenzo FukunagaDepartment of Microbiology and Molecular Genetics, University of Medicine and Dentistry of New Jersey-New Jersey Medical School, Newark, NJ 07103, USA.
Yukinori Hirano
Katsunori Sugimoto
Rutgers, The State University of New Jersey · US

Funding

Signaling network of Mec1 in DNA damage responseR01GM073876 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI SUGIMOTO, KATSUNORI · 2005 to 2013
$2.7M
Surveillance and maintenance of DNA endsR01CA148939 · NCI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI SUGIMOTO, KATSUNORI · 2011 to 2015
$1.4M
NCI NIH HHS CA148939NCI NIH HHS R01 CA148939NIGMS NIH HHS GM073876NIGMS NIH HHS R01 GM073876
6 · The paper itself

Abstract

Chromosome ends, known as telomeres, have to be distinguished from DNA double-strand breaks that activate DNA damage checkpoints. In budding yeast, the Mre11-Rad50-Xrs2 (MRX) complex associates with DNA ends and promotes checkpoint activation. Rap1 binds to double-stranded telomeric regions and recruits Rif1 and Rif2 to telomeres. Rap1 collaborates with Rif1 and Rif2 and inhibits MRX localization to DNA ends. This Rap1-Rif1-Rif2 function becomes attenuated at shortened telomeres. Here we show that Rap1 acts together with the subtelomere-binding protein Tbf1 and inhibits MRX localization to DNA ends. The placement of a subtelomeric sequence or TTAGGG repeats together with a short telomeric TG repeat sequence inhibits MRX accumulation at nearby DNA ends in a Tbf1-dependent manner. Moreover, tethering of both Tbf1 and Rap1 proteins decreases MRX and Tel1 accumulation at nearby DNA ends. This Tbf1- and Rap1-dependent pathway operates independently of Rif1 or Rif2 function. Depletion of Tbf1 protein stimulates checkpoint activation in cells containing short telomeres but not in cells containing normal-length telomeres. These data support a model in which Tbf1 and Rap1 collaborate to maintain genomic stability of short telomeres.

Indexed as

Amino Acid SequenceDNA-Binding ProteinsDNA, FungalEndodeoxyribonucleasesExodeoxyribonucleasesMolecular Sequence DataRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomereTelomere-Binding ProteinsTranscription FactorsDNA-Binding ProteinsDNA, FungalEndodeoxyribonucleasesExodeoxyribonucleasesMRE11 protein, S cerevisiaeRAP1 protein, S cerevisiaeRepressor ProteinsRIF1 protein, S cerevisiaeRIF2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTBF1 protein, S cerevisiaeTelomere-Binding ProteinsTranscription Factors

Identifiers

PMID22130795
PMCPMC3258178
OpenAlexW2136857934

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.