Evidence map›Paper›PMID 22130672›Full record

ArticleThe Journal of biological chemistry2012

Solution structure of RING finger-like domain of retinoblastoma-binding protein-6 (RBBP6) suggests it functions as a U-box.

Mautin A Kappo, Eiso Ab, Faqeer Hassem, R Andrew Atkinson, Andrew Faro, Victor Muleya, Takalani Mulaudzi, John O Poole, Jean M McKenzie, Moredreck Chibi and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

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  11. Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Mautin A KappoBiotechnology Department, University of the Western Cape, Bellville 7535, South Africa.
Eiso Ab
Faqeer Hassem
R Andrew Atkinson
Andrew Faro
Victor Muleya
Takalani Mulaudzi
John O Poole
Jean M McKenzie
Moredreck Chibi
Joanna C Moolman-Smook
D Jasper G Rees
David J R Pugh
University of the Western Cape · ZAStellenbosch University · ZAInstitut de génétique et de biologie moléculaire et cellulaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinoblastoma-binding protein-6 (RBBP6) plays a facilitating role, through its RING finger-like domain, in the ubiquitination of p53 by Hdm2 that is suggestive of E4-like activity. Although the presence of eight conserved cysteine residues makes it highly probable that the RING finger-like domain coordinates two zinc ions, analysis of the primary sequence suggests an alternative classification as a member of the U-box family, the members of which do not bind zinc ions. We show here that despite binding two zinc ions, the domain adopts a homodimeric structure highly similar to those of a number of U-boxes. Zinc ions could be replaced by cadmium ions without significantly disrupting the structure or the stability of the domain, although the rate of substitution was an order of magnitude slower than any previous measurement, suggesting that the structure is particularly stable, a conclusion supported by the high thermal stability of the domain. A hallmark of U-box-containing proteins is their association with chaperones, with which they cooperate in eliminating irretrievably unfolded proteins by tagging them for degradation by the proteasome. Using a yeast two-hybrid screen, we show that RBBP6 interacts with chaperones Hsp70 and Hsp40 through its N-terminal ubiquitin-like domain. Taken together with the structural similarities to U-box-containing proteins, our data suggest that RBBP6 plays a role in chaperone-mediated ubiquitination and possibly in protein quality control.

Indexed as

CadmiumCarrier ProteinsDNA-Binding ProteinsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsHumansProtein BindingRING Finger DomainsSaccharomyces cerevisiaeTwo-Hybrid System TechniquesUbiquitinationUbiquitin-Protein LigasesZincCadmiumCarrier ProteinsDNA-Binding ProteinsHSP40 Heat-Shock ProteinsHSP70 Heat-Shock ProteinsRBBP6 protein, humanUbiquitin-Protein LigasesZinc

Identifiers

PMID22130672
PMCPMC3293548
OpenAlexW2169303832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.