Evidence map›Paper›PMID 22128124›Full record

ArticleThe Plant cell2011

Evidence for a SAL1-PAP chloroplast retrograde pathway that functions in drought and high light signaling in Arabidopsis.

Gonzalo M Estavillo, Peter A Crisp, Wannarat Pornsiriwong, Markus Wirtz, Derek Collinge, Chris Carrie, Estelle Giraud, James Whelan, Pascale David, Hélène Javot and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 295 papers.

0numbers the graph read from it
0cells of the map it votes in
295citing papers in PubMed
14.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

295 citing papers in PubMed, 547 citations in OpenAlex.

  1. Article
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  4. Article
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  8. Article
  9. Chloroplasts and Plant Sustainability: Key Roles and Emerging Insights.International journal of molecular sciences · 2026
    Review
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  11. Article
  12. Article
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  14. Article
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235 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Gonzalo M EstavilloAustralian Research Council Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University Canberra, Acton, Australian Capital Territory 0200, Australia.
Peter A Crisp
Wannarat Pornsiriwong
Markus Wirtz
Derek Collinge
Chris Carrie
Estelle Giraud
James Whelan
Pascale David
Hélène Javot
Charles Brearley
Rüdiger Hell
Elena Marin
Barry J Pogson
Australian National University · AUARC Centre of Excellence in Plant Energy Biology · AUHeidelberg University · DELaboratoire de Biologie du Développement · FRAustralian Research Council · AUCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversity of East Anglia · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compartmentation of the eukaryotic cell requires a complex set of subcellular messages, including multiple retrograde signals from the chloroplast and mitochondria to the nucleus, to regulate gene expression. Here, we propose that one such signal is a phosphonucleotide (3'-phosphoadenosine 5'-phosphate [PAP]), which accumulates in Arabidopsis thaliana in response to drought and high light (HL) stress and that the enzyme SAL1 regulates its levels by dephosphorylating PAP to AMP. SAL1 accumulates in chloroplasts and mitochondria but not in the cytosol. sal1 mutants accumulate 20-fold more PAP without a marked change in inositol phosphate levels, demonstrating that PAP is a primary in vivo substrate. Significantly, transgenic targeting of SAL1 to either the nucleus or chloroplast of sal1 mutants lowers the total PAP levels and expression of the HL-inducible ASCORBATE PEROXIDASE2 gene. This indicates that PAP must be able to move between cellular compartments. The mode of action for PAP could be inhibition of 5' to 3' exoribonucleases (XRNs), as SAL1 and the nuclear XRNs modulate the expression of a similar subset of HL and drought-inducible genes, sal1 mutants accumulate XRN substrates, and PAP can inhibit yeast (Saccharomyces cerevisiae) XRNs. We propose a SAL1-PAP retrograde pathway that can alter nuclear gene expression during HL and drought stress.

Indexed as

Adenosine DiphosphateArabidopsisArabidopsis ProteinsAscorbate PeroxidasesCell NucleusChloroplastsDroughtsExoribonucleasesGene Expression Regulation, PlantLightMitochondriaMutationNucleotidasesPhosphoric Monoester HydrolasesPlant ProteinsSaccharomyces cerevisiae Proteinsadenosine 3'-phosphate-5'-phosphateAdenosine DiphosphateAPX2 protein, ArabidopsisArabidopsis ProteinsAscorbate PeroxidasesExoribonucleasesinositol-1,4-bisphosphate 1-phosphataseNucleotidasesPhosphoric Monoester HydrolasesPlant ProteinsRAT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsXrn1 protein, plantXrn3 protein, Arabidopsis

Identifiers

PMID22128124
PMCPMC3246320
OpenAlexW2118155608

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.