Evidence map›Paper›PMID 22125417›Full record

ArticleInternational journal of mass spectrometry2011

Investigation of VUV Photodissociation Propensities Using Peptide Libraries.

Xiaohui Liu, Yong Fuji Li, Brian C Bohrer, Randy J Arnold, Predrag Radivojac, Haixu Tang, James P Reilly

Abstract read
In one paragraph

Article in International journal of mass spectrometry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. 157 nm photodissociation of dipeptide ions containing N-terminal arginine.Journal of the American Society for Mass Spectrometry · 2014
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaohui LiuDepartment of Chemistry, Indiana University, Bloomington, Indiana 47405, and School of Informatics and Computing, Indiana University, Bloomington, Indiana 47408.
Yong Fuji Li
Brian C Bohrer
Randy J Arnold
Predrag Radivojac
Haixu Tang
James P Reilly

Funding

Computational approaches to protein identification and quantification using MS/MSR01GM103725 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI RADIVOJAC, PREDRAG · 2012 to 2015
$1.7M
Computational approaches to protein identification and quantification using MS/MSR01RR024236 · NCRR · TRUSTEES OF INDIANA UNIVERSITY · PI RADIVOJAC, PREDRAG · 2008 to 2010
$810k
NCRR NIH HHS R01 RR024236NIGMS NIH HHS R01 GM103725
6 · The paper itself

Abstract

PSD does not usually generate a complete series of y-type ions, particularly at high mass, and this is a limitation for de novo sequencing algorithms. It is demonstrated that b(2) and b(3) ions can be used to help assign high mass x(N-2) and x(N-3) fragments that are found in vacuum ultraviolet (VUV) photofragmentation experiments. In addition, v(N)-type ion fragments with side chain loss from the N-terminal residue often enable confirmation of N-terminal amino acids. Libraries containing several thousand peptides were examined using photodissociation in a MALDI-TOF/TOF instrument. 1345 photodissociation spectra with a high S/N ratio were interpreted.

Identifiers

PMID22125417
PMCPMC3224043

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.