Evidence map›Paper›PMID 22123960›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents.

Jonathan L Gordon, David Armisén, Estelle Proux-Wéra, Seán S ÓhÉigeartaigh, Kevin P Byrne, Kenneth H Wolfe

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 145 citations in OpenAlex.

  1. Mating-Type System Analysis and Domestication ofJournal of fungi (Basel, Switzerland) · 2026
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  3. Review
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  8. The metabolic domestication syndrome of budding yeast.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Genomic analysis ofMicrobial genomics · 2023
    Article
  11. POInTBMC bioinformatics · 2023
    Article
  12. Article
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  15. Article
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  17. Biotechnological Importance ofJournal of fungi (Basel, Switzerland) · 2021
    Review
  18. Article
  19. Improvement ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jonathan L GordonSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
David Armisén
Estelle Proux-Wéra
Seán S ÓhÉigeartaigh
Kevin P Byrne
Kenneth H Wolfe
Trinity College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigate yeast sex chromosome evolution by comparing genome sequences from 16 species in the family Saccharomycetaceae, including data from genera Tetrapisispora, Kazachstania, Naumovozyma, and Torulaspora. We show that although most yeast species contain a mating-type (MAT) locus and silent HML and HMR loci structurally analogous to those of Saccharomyces cerevisiae, their detailed organization is highly variable and indicates that the MAT locus is a deletion hotspot. Over evolutionary time, chromosomal genes located immediately beside MAT have continually been deleted, truncated, or transposed to other places in the genome in a process that is gradually shortening the distance between MAT and HML. Each time a gene beside MAT is removed by deletion or transposition, the next gene on the chromosome is brought into proximity with MAT and is in turn put at risk for removal. This process has also continually replaced the triplicated sequence regions, called Z and X, that allow HML and HMR to be used as templates for DNA repair at MAT during mating-type switching. We propose that the deletion and transposition events are caused by evolutionary accidents during mating-type switching, combined with natural selection to keep MAT and HML on the same chromosome. The rate of deletion accelerated greatly after whole-genome duplication, probably because genes were redundant and could be deleted without requiring transposition. We suggest that, despite its mutational cost, switching confers an evolutionary benefit by providing a way for an isolated germinating spore to reform spores if the environment is too poor.

Indexed as

Evolution, MolecularChromosomes, FungalConserved SequenceDNA, FungalDNA Transposable ElementsGenes, Mating Type, FungalGenes, SwitchGenetic LinkageGenetic LociMolecular Sequence DataSaccharomyces cerevisiaeSequence DeletionSex ChromosomesDNA, FungalDNA Transposable Elements

Identifiers

PMID22123960
PMCPMC3250169
OpenAlexW1990456795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.