Evidence map›Paper›PMID 22123943›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.

Mohamed S Donia, W Florian Fricke, Frédéric Partensky, James Cox, Sherif I Elshahawi, James R White, Adam M Phillippy, Michael C Schatz, Joern Piel, Margo G Haygood and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 149 citations in OpenAlex.

  1. Experimental Evidence for a Metal-Related Function of a Cyanobactin.Angewandte Chemie (International ed. in English) · 2026
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17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 4 countries.

Mohamed S DoniaDepartment of Medicinal Chemistry, University of Utah, Salt Lake City, UT 84112, USA.
W Florian Fricke
Frédéric Partensky
James Cox
Sherif I Elshahawi
James R White
Adam M Phillippy
Michael C Schatz
Joern Piel
Margo G Haygood
Jacques Ravel
Eric W Schmidt
University of Maryland, Baltimore · USUniversity of Utah · USOregon Health & Science University · USCentre National de la Recherche Scientifique · FRUniversity of Bonn · DE

Funding

Symbiont Models for Natural Product Pathway ManipulationR01GM071425 · NIGMS · UNIVERSITY OF UTAH · PI SCHMIDT, ERIC W · 2006 to 2010
$1.8M
NIGMS NIH HHS GM071425NIGMS NIH HHS R01 GM071425
6 · The paper itself

Abstract

The relationship between tunicates and the uncultivated cyanobacterium Prochloron didemni has long provided a model symbiosis. P. didemni is required for survival of animals such as Lissoclinum patella and also makes secondary metabolites of pharmaceutical interest. Here, we present the metagenomes, chemistry, and microbiomes of four related L. patella tunicate samples from a wide geographical range of the tropical Pacific. The remarkably similar P. didemni genomes are the most complex so far assembled from uncultivated organisms. Although P. didemni has not been stably cultivated and comprises a single strain in each sample, a complete set of metabolic genes indicates that the bacteria are likely capable of reproducing outside the host. The sequences reveal notable peculiarities of the photosynthetic apparatus and explain the basis of nutrient exchange underlying the symbiosis. P. didemni likely profoundly influences the lipid composition of the animals by synthesizing sterols and an unusual lipid with biofuel potential. In addition, L. patella also harbors a great variety of other bacterial groups that contribute nutritional and secondary metabolic products to the symbiosis. These bacteria possess an enormous genetic potential to synthesize new secondary metabolites. For example, an antitumor candidate molecule, patellazole, is not encoded in the genome of Prochloron and was linked to other bacteria from the microbiome. This study unveils the complex L. patella microbiome and its impact on primary and secondary metabolism, revealing a remarkable versatility in creating and exchanging small molecules.

Indexed as

AnimalsGenomeGenomicsMetagenomeMetagenomicsModels, BiologicalModels, GeneticMolecular Sequence DataPhotosynthesisPhylogenyProchloronRNA, Ribosomal, 16SSequence Analysis, DNASymbiosisUrochordataRNA, Ribosomal, 16S

Identifiers

PMID22123943
PMCPMC3251135
OpenAlexW2036793188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.