ArticleNucleic acids research2012
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- Nuclear, mitochondrial, andmSphere · 2026Article
- The metazoan landscape of mitochondrial DNA gene order and content is shaped by selection and affects mitochondrial transcription.Communications biology · 2023Article
- MTSviewer: A database to visualize mitochondrial targeting sequences, cleavage sites, and mutations on protein structures.PloS one · 2023Article
- Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin.Molecular biology and evolution · 2022Article
- Extensive introgression and mosaic genomes of Mediterranean endemic lizards.Nature communications · 2021Article
- Characterization of the mitochondrial genome of an ancient amphipod Halice sp. MT-2017 (Pardaliscidae) from 10,908 m in the Mariana Trench.Scientific reports · 2019Article
- What does mitogenomics tell us about the evolutionary history of the Drosophila buzzatii cluster (repleta group)?PloS one · 2019Article
- Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.Bioinformatics (Oxford, England) · 2018Article
- Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida.BMC evolutionary biology · 2018Article
- The first complete mitogenome of the South China deep-sea giant isopodEcology and evolution · 2017Article
- Article
- Comparative Mitogenomics of the Genus Odontobutis (Perciformes: Gobioidei: Odontobutidae) Revealed Conserved Gene Rearrangement and High Sequence Variations.International journal of molecular sciences · 2015Article
- Evolution of the metazoan mitochondrial replicase.Genome biology and evolution · 2015Article
- Adaptation of the Mitochondrial Genome in Cephalopods: Enhancing Proton Translocation Channels and the Subunit Interactions.PloS one · 2015Article
- Article
- Structure of the large ribosomal subunit from human mitochondria.Science (New York, N.Y.) · 2014Article
- Evolution of multipartite mitochondrial genomes in the booklice of the genus Liposcelis (Psocoptera).BMC genomics · 2014Article
- Ascidian mitogenomics: comparison of evolutionary rates in closely related taxa provides evidence of ongoing speciation events.Genome biology and evolution · 2014Article
- Adaptive evolution of mitochondrial energy metabolism genes associated with increased energy demand in flying insects.PloS one · 2014Article
- Article
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9 authors.
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Abstract
The MITOchondrial genome database of metaZOAns (MitoZoa) is a public resource for comparative analyses of metazoan mitochondrial genomes (mtDNA) at both the sequence and genomic organizational levels. The main characteristics of the MitoZoa database are the careful revision of mtDNA entry annotations and the possibility of retrieving gene order and non-coding region (NCR) data in appropriate formats. The MitoZoa retrieval system enables basic and complex queries at various taxonomic levels using different search menus. MitoZoa 2.0 has been enhanced in several aspects, including: a re-annotation pipeline to check the correctness of protein-coding gene predictions; a standardized annotation of introns and of precursor ORFs whose functionality is post-transcriptionally recovered by RNA editing or programmed translational frameshifting; updates of taxon-related fields and a BLAST sequence similarity search tool. Database novelties and the definition of standard mtDNA annotation rules, together with the user-friendly retrieval system and the BLAST service, make MitoZoa a valuable resource for comparative and evolutionary analyses as well as a reference database to assist in the annotation of novel mtDNA sequences. MitoZoa is freely accessible at http://www.caspur.it/mitozoa.
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