Evidence map›Paper›PMID 22122263›Full record

ArticleHuman gene therapy2012

Characterization of an HIV-targeted transcriptional gene-silencing RNA in primary cells.

Anne-Marie W Turner, Amanda M Ackley, Michael A Matrone, Kevin V Morris

Open access · greenAbstract read
In one paragraph

Article in Human gene therapy, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. A CRISPR screen of HIV dependency factors revealsbioRxiv : the preprint server for biology · 2023
    Article
  6. Article
  7. Review
  8. Broadly active zinc finger protein-guided transcriptional activation of HIV-1.Molecular therapy. Methods & clinical development · 2021
    Article
  9. Block and Lock HIV Cure Strategies to Control the Latent Reservoir.Frontiers in cellular and infection microbiology · 2020
    Review
  10. Article
  11. Review
  12. Stable Transcriptional Repression and Parasitism of HIV-1.Molecular therapy. Nucleic acids · 2018
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Transcriptional gene silencing in humans.Nucleic acids research · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anne-Marie W TurnerMolecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA 92037, USA.
Amanda M Ackley
Michael A Matrone
Kevin V Morris
Scripps Research Institute · US

Funding

Transcriptional Gene Silencing of HIV and CCR5R01HL083473 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI MORRIS, KEVIN V · 2005 to 2009
$2.3M
Non-coding RNAs involved in HIV-1 LatencyR01AI084406 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MORRIS, KEVIN V · 2009 to 2010
$889k
NHLBI NIH HHS NIH R01HL083473NIAID NIH HHS R01AI084406
6 · The paper itself

Abstract

Small antisense RNAs targeted to the HIV-1 promoter have been shown to remodel the surrounding chromatin to a state unfavorable for transcriptional activation, yet transcriptional gene silencing (TGS) of HIV-1 has, to date, not been shown in primary human cells. We demonstrate here that TGS can reduce viral transcription in primary human CD4(+) T cells; however, increasing viral burden results in the loss of this antiviral effect. This observation suggests a critical level at which viral RNA can dilute out effective targeting by TGS-based RNAs. Furthermore, studies into off-target effects have identified a potential interaction between the small nucleolar RNA pathway and the TGS-based antisense RNA, resulting in activation of p53. Although not overtly toxic to primary cells, this represents a novel interaction between antisense RNAs and a cellular pathway that should be considered when pursuing small antisense RNA-based therapeutics.

Indexed as

Gene SilencingCD4-Positive T-LymphocytesChromatinGenetic VectorsHEK293 CellsHIV-1HumansJurkat CellsPromoter Regions, GeneticRNA, AntisenseTranscriptional ActivationTranscription, GeneticTumor Suppressor Protein p53ChromatinRNA, AntisenseTumor Suppressor Protein p53

Identifiers

PMID22122263
PMCPMC3360501
OpenAlexW2061432075

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.