Evidence map›Paper›PMID 22121226›Full record

ArticleNucleic acids research2012

Lack of recognition by global-genome nucleotide excision repair accounts for the high mutagenicity and persistence of aristolactam-DNA adducts.

Victoria S Sidorenko, Jung-Eun Yeo, Radha R Bonala, Francis Johnson, Orlando D Schärer, Arthur P Grollman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Mechanisms of DNA repair and mutagenesis induced by acetaldehyde, acrolein, aristolochic acids, and vinyl chloride.Journal of environmental science and health. Part C, Toxicology and carcinogenesis · 2025
    Review
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  7. Review
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  10. Review
  11. Article
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  14. Krüppel-like factor 6-mediated loss of BCAA catabolism contributes to kidney injury in mice and humans.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Victoria S SidorenkoDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, USA.
Jung-Eun Yeo
Radha R Bonala
Francis Johnson
Orlando D Schärer
Arthur P Grollman
Stony Brook University · US

Funding

SYNTHETIC & ANALYTICALP01ES004068 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SHIBUTANI, SHINYA · 1987 to 2011
$14.1M
Coordination of the late steps of human nucleotide excision repairR01GM080454 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SCHARER, ORLANDO D. · 2007 to 2010
$1.4M
NIEHS NIH HHS ES004068NIGMS NIH HHS GM080454
6 · The paper itself

Abstract

Exposure to aristolochic acid (AA), a component of Aristolochia plants used in herbal remedies, is associated with chronic kidney disease and urothelial carcinomas of the upper urinary tract. Following metabolic activation, AA reacts with dA and dG residues in DNA to form aristolactam (AL)-DNA adducts. These mutagenic lesions generate a unique TP53 mutation spectrum, dominated by A:T to T:A transversions with mutations at dA residues located almost exclusively on the non-transcribed strand. We determined the level of AL-dA adducts in human fibroblasts treated with AA to determine if this marked strand bias could be accounted for by selective resistance to global-genome nucleotide excision repair (GG-NER). AL-dA adduct levels were elevated in cells deficient in GG-NER and transcription-coupled NER, but not in XPC cell lines lacking GG-NER only. In vitro, plasmids containing a single AL-dA adduct were resistant to the early recognition and incision steps of NER. Additionally, the NER damage sensor, XPC-RAD23B, failed to specifically bind to AL-DNA adducts. However, placing AL-dA in mismatched sequences promotes XPC-RAD23B binding and renders this adduct susceptible to NER, suggesting that specific structural features of this adduct prevent processing by NER. We conclude that AL-dA adducts are not recognized by GG-NER, explaining their high mutagenicity and persistence in target tissues.

Indexed as

DNA RepairMutagenesisAdenineAristolochic AcidsCell LineDeoxyadenosinesDNA AdductsDNA-Binding ProteinsGenome, HumanHeterocyclic Compounds, 4 or More RingsHumansMutagens7-(deoxyadenosin-N(6)--yl)aristolactam IIAdeninearistolochic acid IIAristolochic AcidsDeoxyadenosinesDNA AdductsDNA-Binding ProteinsHeterocyclic Compounds, 4 or More RingsMutagens

Identifiers

PMID22121226
PMCPMC3315299
OpenAlexW2172021748

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.