Evidence map›Paper›PMID 22120744›Full record

ArticleActa crystallographica. Section D, Biological crystallography2011

The structure of Serratia marcescens Lip, a membrane-bound component of the type VI secretion system.

Vincenzo A Rao, Sharon M Shepherd, Grant English, Sarah J Coulthurst, William N Hunter

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. First crystal structure of the DUF2436 domain of virulence proteins from Porphyromonas gingivalis.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  3. Article
  4. Review
  5. The EMBO journal · 2019
    Article
  6. Article
  7. TheFrontiers in cellular and infection microbiology · 2018
    Review
  8. Type VI secretion system: secretion by a contractile nanomachine.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  9. Article
  10. Article
  11. Article
  12. Structure of Pseudomonas aeruginosa inosine 5'-monophosphate dehydrogenase.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Structural biology of type VI secretion systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Vincenzo A RaoCollege of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland.
Sharon M Shepherd
Grant English
Sarah J Coulthurst
William N Hunter
University of Dundee · GB

Funding

Wellcome TrustWellcome Trust 082596Wellcome Trust 083481
6 · The paper itself

Abstract

Lip is a membrane-bound lipoprotein and a core component of the type VI secretion system found in Gram-negative bacteria. The structure of a Lip construct (residues 29-176) from Serratia marcescens (SmLip) has been determined at 1.92 Å resolution. Experimental phases were derived using a single-wavelength anomalous dispersion approach on a sample cocrystallized with iodide. The membrane localization of the native protein was confirmed. The structure is that of the globular domain lacking only the lipoprotein signal peptide and the lipidated N-terminus of the mature protein. The protein fold is dominated by an eight-stranded β-sandwich and identifies SmLip as a new member of the transthyretin family of proteins. Transthyretin and the only other member of the family fold, 5-hydroxyisourate hydrolase, form homotetramers important for their function. The asymmetric unit of SmLip is a tetramer with 222 symmetry, but the assembly is distinct from that previously noted for the transthyretin protein family. However, structural comparisons and bacterial two-hybrid data suggest that the SmLip tetramer is not relevant to its role as a core component of the type VI secretion system, but rather reflects a propensity for SmLip to participate in protein-protein interactions. A relatively low level of sequence conservation amongst Lip homologues is noted and is restricted to parts of the structure that might be involved in interactions with physiological partners.

Indexed as

Amino Acid SequenceBacterial ProteinsModels, MolecularMolecular Sequence DataProtein BindingProtein FoldingProtein Structure, QuaternaryProtein Structure, SecondarySequence AlignmentSerratia marcescensStructural Homology, ProteinBacterial Proteins

Identifiers

PMID22120744
PMCPMC3225178
OpenAlexW1965670038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.