ArticleDatabase : the journal of biological databases and curation2011
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss.
Article in Database : the journal of biological databases and curation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- FishSNP: a high quality cross-species SNP database of fishes.Scientific data · 2024Article
- Differences among families in craniofacial shape at early life-stages of Arctic charr (Salvelinus alpinus).BMC developmental biology · 2020Article
- The Grass Carp Genomic Visualization Database (GCGVD): an informational platform for genome biology of grass carp.International journal of biological sciences · 2019Article
- Gene expression in the phenotypically plastic Arctic charr (Salvelinus alpinus): A focus on growth and ossification at early stages of development.Evolution & development · 2019Article
- De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species.BMC genomics · 2018Article
- Differential gene expression during early development in recently evolved and sympatric Arctic charr morphs.PeerJ · 2018Article
- The use of genomic information increases the accuracy of breeding value predictions for sea louse (Caligus rogercresseyi) resistance in Atlantic salmon (Salmo salar).Genetics, selection, evolution : GSE · 2017Article
- The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations.Database : the journal of biological databases and curation · 2017Article
- Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes.BMC genomics · 2015Article
- The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic acids research · 2015Article
- The developmental transcriptome of contrasting Arctic charr (F1000Research · 2015Article
- Article
- Inactivated E. coli transformed with plasmids that produce dsRNA against infectious salmon anemia virus hemagglutinin show antiviral activity when added to infected ASK cells.Frontiers in microbiology · 2015Article
- Patterns of miRNA expression in Arctic charr development.PloS one · 2014Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
SalmonDB is a new multiorganism database containing EST sequences from Salmo salar, Oncorhynchus mykiss and the whole genome sequence of Danio rerio, Gasterosteus aculeatus, Tetraodon nigroviridis, Oryzias latipes and Takifugu rubripes, built with core components from GMOD project, GOPArc system and the BioMart project. The information provided by this resource includes Gene Ontology terms, metabolic pathways, SNP prediction, CDS prediction, orthologs prediction, several precalculated BLAST searches and domains. It also provides a BLAST server for matching user-provided sequences to any of the databases and an advanced query tool (BioMart) that allows easy browsing of EST databases with user-defined criteria. These tools make SalmonDB database a valuable resource for researchers searching for transcripts and genomic information regarding S. salar and other salmonid species. The database is expected to grow in the near feature, particularly with the S. salar genome sequencing project. Database URL: http://genomicasalmones.dim.uchile.cl/
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Registered trials
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