Evidence map›Paper›PMID 22118830›Full record

ArticleEuropean journal of medicinal chemistry2012

Structural analysis of inhibition of Mycobacterium tuberculosis methionine aminopeptidase by bengamide derivatives.

Jing-Ping Lu, Xiu-Hua Yuan, Qi-Zhuang Ye

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Advances in Bacterial Methionine Aminopeptidase Inhibition.Current topics in medicinal chemistry · 2016
    Review
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Jing-Ping LuDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN 46202, United States.
Xiu-Hua Yuan
Qi-Zhuang Ye
Université Bourgogne Franche-Comté · FR

Funding

Antibacterial methionine aminopeptidase inhibitorsR01AI065898 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI YE, QI-ZHUANG · 2005 to 2009
$2.0M
Antibacterial Methionine Aminopeptidase InhibitorsR56AI065898 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI YE, QI-ZHUANG · 2010 to 2010
$385k
NIAID NIH HHS R01 AI065898NIAID NIH HHS R56 AI065898
6 · The paper itself

Abstract

Natural product-derived bengamides possess potent antiproliferative activity and target human methionine aminopeptidases for their cellular effects. Using bengamides as a template, several derivatives were designed and synthesized as inhibitors of methionine aminopeptidases of Mycobacterium tuberculosis, and initial antitubercular activity were observed. Here, we present three new X-ray structures of the tubercular enzyme MtMetAP1c in complex with the inhibitors in the Mn(II) form and in the Ni(II) form. All amide moieties of the bengamide derivatives bind to the unique shallow cavity and interact with a flat surface created by His-212 of MtMetAP1c in the Mn(II) form. However, the active site metal has significant influence on the binding mode, because the amide takes a different conformation in the Ni(II) form. The interactions of these inhibitors at the active site provide the structural basis for further modification of these bengamide inhibitors for improved potency and selectivity.

Indexed as

AminopeptidasesAzepinesBiological ProductsCatalytic DomainDrug DesignHumansManganeseMethionyl AminopeptidasesModels, MolecularMycobacterium tuberculosisNickelProtease InhibitorsAminopeptidasesAzepinesBiological ProductsManganeseMethionyl AminopeptidasesNickelProtease Inhibitors

Identifiers

PMID22118830
PMCPMC3365506
OpenAlexW2060494402

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.