Evidence map›Paper›PMID 22118678›Full record

ArticleChemistry & biology2011

Titration-based screening for evaluation of natural product extracts: identification of an aspulvinone family of luciferase inhibitors.

Patricia G Cruz, Douglas S Auld, Pamela J Schultz, Scott Lovell, Kevin P Battaile, Ryan MacArthur, Min Shen, Giselle Tamayo-Castillo, James Inglese, David H Sherman

Abstract read
In one paragraph

Article in Chemistry & biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Evaluation of Firefly andInternational journal of molecular sciences · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. The 9Frontiers in cellular and infection microbiology · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Bioconversion of 6-Tetrahedron letters · 2015
    Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Patricia G CruzLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109-2216, USA.
Douglas S Auld
Pamela J Schultz
Scott Lovell
Kevin P Battaile
Ryan MacArthur
Min Shen
Giselle Tamayo-Castillo
James Inglese
David H Sherman

Funding

NIH Chemical Genomics CenterZIBTR000004 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI MCKEW, JOHN · 2012 to 2014
$52.3M
TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI FISCHER, CHRISTOPHER JAMES · 2002 to 2011
$20.1M
of Natural Product based Drugs and Bioenergetic Materials from Costa Rican BiotaU01TW007404 · FIC · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H · 2005 to 2013
$7.6M
FIC NIH HHS U01 TW007404NCRR NIH HHS P20 RR017708NCRR NIH HHS P20 RR-17708
6 · The paper itself

Abstract

The chemical diversity of nature has tremendous potential for the discovery of molecular probes and medicinal agents. However, sensitivity of HTS assays to interfering components of crude extracts derived from plants, and macro- and microorganisms has curtailed their use in lead discovery. Here, we describe a process for leveraging the concentration-response curves obtained from quantitative HTS to improve the initial selection of "actives" from a library of partially fractionated natural product extracts derived from marine actinomycetes and fungi. By using pharmacological activity, the first-pass CRC paradigm improves the probability that labor-intensive subsequent steps of reculturing, extraction, and bioassay-guided isolation of active component(s) target the most promising strains and growth conditions. We illustrate how this process identified a family of fungal metabolites as potent inhibitors of firefly luciferase, subsequently resolved in molecular detail by X-ray crystallography.

Indexed as

AspergillusBinding SitesCrystallography, X-RayDatabases, ProteinEnzyme ActivationEnzyme InhibitorsHigh-Throughput Screening AssaysLactonesLuciferasesMagnetic Resonance SpectroscopyMolecular ConformationProtein Structure, TertiaryEnzyme InhibitorsLactonesLuciferases

Identifiers

PMID22118678
PMCPMC3225805

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.