Evidence map›Paper›PMID 22117077›Full record

ArticleThe Journal of biological chemistry2012

Photoaffinity labeling of high affinity nicotinic acid adenine dinucleotide phosphate (NAADP)-binding proteins in sea urchin egg.

Timothy F Walseth, Yaping Lin-Moshier, Pooja Jain, Margarida Ruas, John Parrington, Antony Galione, Jonathan S Marchant, James T Slama

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Convergent activation of CaScience signaling · 2023
    Article
  5. Article
  6. Endo-Lysosomal Two-Pore Channels and Their Protein Partners.Handbook of experimental pharmacology · 2023
    Review
  7. NAADP-Evoked CaHandbook of experimental pharmacology · 2023
    Article
  8. NAADP-Dependent TPC Current.Handbook of experimental pharmacology · 2023
    Article
  9. NAADP-Mediated CaHandbook of experimental pharmacology · 2023
    Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. NAADP-binding proteins find their identity.Trends in biochemical sciences · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. NAADP: From Discovery to Mechanism.Frontiers in immunology · 2021
    Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Timothy F WalsethDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA. walse001@umn.edu
Yaping Lin-Moshier
Pooja Jain
Margarida Ruas
John Parrington
Antony Galione
Jonathan S Marchant
James T Slama
University of Oxford · GBUniversity of Minnesota Medical Center · USUniversity of Toledo · USUniversity of Minnesota · US

Funding

Functional architecture of IP3-evoked local Ca2+ signalsR01GM088790 · NIGMS · UNIVERSITY OF MINNESOTA · PI MARCHANT, JONATHAN S, SLAMA, JAMES T · 2009 to 2025
$4.7M
NIGMS NIH HHS GM088790NIGMS NIH HHS R01 GM088790Wellcome Trust
6 · The paper itself

Abstract

Nicotinic acid adenine dinucleotide phosphate (NAADP) is a messenger that regulates calcium release from intracellular acidic stores. Recent studies have identified two-pore channels (TPCs) as endolysosomal channels that are regulated by NAADP; however, the nature of the NAADP receptor binding site is unknown. To further study NAADP binding sites, we have synthesized and characterized [(32)P-5-azido]nicotinic acid adenine dinucleotide phosphate ([(32)P-5N(3)]NAADP) as a photoaffinity probe. Photolysis of sea urchin egg homogenates preincubated with [(32)P-5N(3)]NAADP resulted in specific labeling of 45-, 40-, and 30-kDa proteins, which was prevented by inclusion of nanomolar concentrations of unlabeled NAADP or 5N(3)-NAADP, but not by micromolar concentrations of structurally related nucleotides such as NAD, nicotinic acid adenine dinucleotide, nicotinamide mononucleotide, nicotinic acid, or nicotinamide. [(32)P-5N(3)]NAADP binding was saturable and displayed high affinity (K(d) ∼10 nM) in both binding and photolabeling experiments. [(32)P-5N(3)]NAADP photolabeling was irreversible in a high K(+) buffer, a hallmark feature of NAADP binding in the egg system. The proteins photolabeled by [(32)P-5N(3)]NAADP have molecular masses smaller than the sea urchin TPCs, and antibodies to TPCs do not detect any immunoreactivity that comigrates with either the 45-kDa or the 40-kDa photolabeled proteins. Interestingly, antibodies to TPC1 and TPC3 were able to immunoprecipitate a small fraction of the 45- and 40-kDa photolabeled proteins, suggesting that these proteins associate with TPCs. These data suggest that high affinity NAADP binding sites are distinct from TPCs.

Indexed as

AnimalsBinding SitesCalcium ChannelsNADPOvumPhotoaffinity LabelsProtein BindingStrongylocentrotus purpuratusCalcium ChannelsNAADPNADPPhotoaffinity Labels

Identifiers

PMID22117077
PMCPMC3268392
OpenAlexW1984638411

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.