Evidence map›Paper›PMID 22117075›Full record

ArticleThe Journal of biological chemistry2012

Photoaffinity labeling of nicotinic acid adenine dinucleotide phosphate (NAADP) targets in mammalian cells.

Yaping Lin-Moshier, Timothy F Walseth, Dev Churamani, Sean M Davidson, James T Slama, Robert Hooper, Eugen Brailoiu, Sandip Patel, Jonathan S Marchant

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed, 1 pooled it
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 1 synthesis or guideline pooled it, 160 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Convergent activation of CaScience signaling · 2023
    Article
  8. Article
  9. Endo-Lysosomal Two-Pore Channels and Their Protein Partners.Handbook of experimental pharmacology · 2023
    Review
  10. TPC Functions in the Immune System.Handbook of experimental pharmacology · 2023
    Article
  11. NAADP-Evoked CaHandbook of experimental pharmacology · 2023
    Article
  12. NAADP-Dependent TPC Current.Handbook of experimental pharmacology · 2023
    Article
  13. Article
  14. NAADP-Mediated CaHandbook of experimental pharmacology · 2023
    Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Review

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Yaping Lin-MoshierDepartment of Pharmacology, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA.
Timothy F Walseth
Dev Churamani
Sean M Davidson
James T Slama
Robert Hooper
Eugen Brailoiu
Sandip Patel
Jonathan S Marchant
University of Minnesota Medical Center · USMRC Laboratory for Molecular Cell Biology · GBUniversity College London · GBTemple University · USUniversity of Toledo · US

Funding

Functional architecture of IP3-evoked local Ca2+ signalsR01GM088790 · NIGMS · UNIVERSITY OF MINNESOTA · PI MARCHANT, JONATHAN S, SLAMA, JAMES T · 2009 to 2025
$4.7M
Role of nonnuclear estrogen receptor GPR30 in preganglionic vagal neuronsR01HL090804 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI BRAILOIU, EUGEN · 2009 to 2012
$1.5M
Biotechnology and Biological Sciences Research Council BB/G013721/1British Heart Foundation PG/10/005/28175NHLBI NIH HHS HL90804NHLBI NIH HHS R01 HL090804NIGMS NIH HHS GM088790NIGMS NIH HHS R01 GM088790
6 · The paper itself

Abstract

Nicotinic acid adenine dinucleotide phosphate (NAADP) is an agonist-generated second messenger that releases Ca(2+) from intracellular acidic Ca(2+) stores. Recent evidence has identified the two-pore channels (TPCs) within the endolysosomal system as NAADP-regulated Ca(2+) channels that release organellar Ca(2+) in response to NAADP. However, little is known about the mechanism coupling NAADP binding to calcium release. To identify the NAADP binding site, we employed a photoaffinity labeling method using a radioactive photoprobe based on 5-azido-NAADP ([(32)P-5N(3)]NAADP) that exhibits high affinity binding to NAADP receptors. In several systems that are widely used for studying NAADP-evoked Ca(2+) signaling, including sea urchin eggs, human cell lines (HEK293, SKBR3), and mouse pancreas, 5N(3)-NAADP selectively labeled low molecular weight sites that exhibited the diagnostic pharmacology of NAADP-sensitive Ca(2+) release. Surprisingly, we were unable to demonstrate labeling of endogenous, or overexpressed, TPCs. Furthermore, labeling of high affinity NAADP binding sites was preserved in pancreatic samples from TPC1 and TPC2 knock-out mice. These photolabeling data suggest that an accessory component within a larger TPC complex is responsible for binding NAADP that is unique from the core channel itself. This observation necessitates critical evaluation of current models of NAADP-triggered activation of the TPC family.

Indexed as

AnimalsBinding SitesCalcium ChannelsCalcium SignalingCell Line, TumorHEK293 CellsHumansIon Channel GatingMiceMice, KnockoutNADPPancreasPhotoaffinity LabelsTwo-Pore ChannelsCalcium ChannelsNAADPNADPPhotoaffinity LabelsTPCN1 protein, humanTPCN2 protein, humanTwo-Pore Channels

Identifiers

PMID22117075
PMCPMC3268391
OpenAlexW1993480617

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.