Evidence map›Paper›PMID 22114184›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Crystal structure of the central axis DF complex of the prokaryotic V-ATPase.

Shinya Saijo, Satoshi Arai, K M Mozaffor Hossain, Ichiro Yamato, Kano Suzuki, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Noboru Ohsawa, Takaho Terada, Mikako Shirouzu and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

  1. NaNature structural & molecular biology · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Rotational Mechanism Model of the Bacterial VFrontiers in physiology · 2019
    Review
  7. Article
  8. Article
  9. Rotation Mechanism of Molecular Motor VBiophysical journal · 2017
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Mechanical modulation of ATP-binding affinity of V1-ATPase.The Journal of biological chemistry · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 1 country.

Shinya SaijoDepartment of Biological Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda-shi, Chiba 278-8510, Japan.
Satoshi Arai
K M Mozaffor Hossain
Ichiro Yamato
Kano Suzuki
Yoshimi Kakinuma
Yoshiko Ishizuka-Katsura
Noboru Ohsawa
Takaho Terada
Mikako Shirouzu
Shigeyuki Yokoyama
So Iwata
Takeshi Murata
Systems Biology Institute · JPTokyo University of Science · JPChiba University · JPEhime University · JPKyoto University · JPSPring-8 · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

V-ATPases function as ATP-dependent ion pumps in various membrane systems of living organisms. ATP hydrolysis causes rotation of the central rotor complex, which is composed of the central axis D subunit and a membrane c ring that are connected by F and d subunits. Here we determined the crystal structure of the DF complex of the prokaryotic V-ATPase of Enterococcus hirae at 2.0-Å resolution. The structure of the D subunit comprised a long left-handed coiled coil with a unique short β-hairpin region that is effective in stimulating the ATPase activity of V(1)-ATPase by twofold. The F subunit is bound to the middle portion of the D subunit. The C-terminal helix of the F subunit, which was believed to function as a regulatory region by extending into the catalytic A(3)B(3) complex, contributes to tight binding to the D subunit by forming a three-helix bundle. Both D and F subunits are necessary to bind the d subunit that links to the c ring. From these findings, we modeled the entire rotor complex (DFdc ring) of V-ATPase.

Indexed as

Amino Acid SequenceCrystallography, X-RayEnterococcusModels, MolecularMolecular Sequence DataProkaryotic CellsProtein Structure, SecondaryProtein SubunitsSequence AlignmentStatic ElectricityStructural Homology, ProteinVacuolar Proton-Translocating ATPasesProtein SubunitsVacuolar Proton-Translocating ATPases

Identifiers

PMID22114184
PMCPMC3250131
OpenAlexW2062006171

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.