Evidence map›Paper›PMID 22113616›Full record

ArticleNature2011

Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9.

Jason S McLellan, Marie Pancera, Chris Carrico, Jason Gorman, Jean-Philippe Julien, Reza Khayat, Robert Louder, Robert Pejchal, Mallika Sastry, Kaifan Dai and 37 more

Abstract read
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 632 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
632citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

632 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
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  7. Review
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  11. Structural Insights Into ManAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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572 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors.

Jason S McLellanVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA.
Marie Pancera
Chris Carrico
Jason Gorman
Jean-Philippe Julien
Reza Khayat
Robert Louder
Robert Pejchal
Mallika Sastry
Kaifan Dai
Sijy O'Dell
Nikita Patel
Syed Shahzad-ul-Hussan
Yongping Yang
Baoshan Zhang
Tongqing Zhou
Jiang Zhu
Jeffrey C Boyington
Gwo-Yu Chuang
Devan Diwanji
Ivelin Georgiev
Young Do Kwon
Doyung Lee
Mark K Louder
Stephanie Moquin
Stephen D Schmidt
Zhi-Yong Yang
Mattia Bonsignori
John A Crump
Saidi H Kapiga
Noel E Sam
Barton F Haynes
Dennis R Burton
Wayne C Koff
Laura M Walker
Sanjay Phogat
Richard Wyatt
Jared Orwenyo
Lai-Xi Wang
James Arthos
Carole A Bewley
John R Mascola
Gary J Nabel
William R Schief
Andrew B Ward
Ian A Wilson
Peter D Kwong

Funding

Neutralization Mechanisms Of Anti-HIV-1 Monoclonal AntibodiesZIAAI005022 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ZHOU, TONGQING · 2009 to 2025
$24.6M
Isolation of Monoclonal Antiobodies Against HIVZIAAI005095 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DORIA-ROSE, NICOLE · 2009 to 2025
$14.5M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI COHEN, MIRIAM · 2002 to 2011
$14.2M
Interaction of HIV envelope with cell surface receptorsZIAAI000883 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ARTHOS, JAMES L · 2009 to 2024
$14.0M
Inhibitors and Probes of HIV-1 Cell FusionZIADK032103 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BEWLEY, CAROLE · 2009 to 2025
$12.5M
HUMAN ANTIBODIES TO HIV-1 BY REPERTOIRE CLONINGR01AI033292 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI BURTON, DENNIS R. · 1992 to 2013
$5.9M
Structural Biology of HIV-1 Neutralizing Antibody Targets for Vaccine DesignR01AI084817 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2009 to 2013
$3.2M
CIHRIntramural NIH HHSNCRR NIH HHS P41 RR017573NCRR NIH HHS RR017573NIAID NIH HHS R01 AI033292NIAID NIH HHS R01 AI084817
6 · The paper itself

Abstract

Variable regions 1 and 2 (V1/V2) of human immunodeficiency virus-1 (HIV-1) gp120 envelope glycoprotein are critical for viral evasion of antibody neutralization, and are themselves protected by extraordinary sequence diversity and N-linked glycosylation. Human antibodies such as PG9 nonetheless engage V1/V2 and neutralize 80% of HIV-1 isolates. Here we report the structure of V1/V2 in complex with PG9. V1/V2 forms a four-stranded β-sheet domain, in which sequence diversity and glycosylation are largely segregated to strand-connecting loops. PG9 recognition involves electrostatic, sequence-independent and glycan interactions: the latter account for over half the interactive surface but are of sufficiently weak affinity to avoid autoreactivity. The structures of V1/V2-directed antibodies CH04 and PGT145 indicate that they share a common mode of glycan penetration by extended anionic loops. In addition to structurally defining V1/V2, the results thus identify a paradigm of antibody recognition for highly glycosylated antigens, which-with PG9-involves a site of vulnerability comprising just two glycans and a strand.

Indexed as

AIDS VaccinesAmino Acid MotifsAmino Acid SequenceAntibodies, NeutralizingAntibody AffinityAntibody SpecificityAntigen-Antibody ComplexBinding Sites, AntibodyConserved SequenceCrystallography, X-RayEpitopesGlycopeptidesGlycosylationHIV-1HIV AntibodiesHIV Envelope Protein gp120AIDS VaccinesAntibodies, NeutralizingAntigen-Antibody ComplexEpitopesGlycopeptidesHIV AntibodiesHIV Envelope Protein gp120Polysaccharides

Identifiers

PMID22113616
PMCPMC3406929

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.