ArticleMolecular plant pathology2012
RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew.
Article in Molecular plant pathology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed.
- Transcriptome Analysis of Potato (Plants (Basel, Switzerland) · 2025Article
- Preliminary transcriptomic analyses revealFrontiers in microbiology · 2025Article
- A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species.PloS one · 2025Article
- Identification of Phytophthora cinnamomi CRN effectors and their roles in manipulating cell death during Persea americana infection.BMC genomics · 2024Article
- Identification and Characterization of Novel Candidate Effector Proteins fromJournal of fungi (Basel, Switzerland) · 2023Article
- Unraveling Plant Cell Death duringMicroorganisms · 2022Review
- How to Unravel the Key Functions of Cryptic Oomycete Elicitin Proteins and Their Role in Plant Disease.Plants (Basel, Switzerland) · 2021Review
- Integration of early disease-resistance phenotyping, histological characterization, and transcriptome sequencing reveals insights into downy mildew resistance in impatiens.Horticulture research · 2021Article
- Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.BMC plant biology · 2019Article
- Comparative Transcriptome Analysis between a Resistant and a Susceptible Wild Tomato Accession in Response toInternational journal of molecular sciences · 2018Article
- Transcriptome reprogramming of resistant and susceptible peach genotypes during Xanthomonas arboricola pv. pruni early leaf infection.PloS one · 2018Article
- Transcriptome analysis of Phytophthora litchii reveals pathogenicity arsenals and confirms taxonomic status.PloS one · 2017Article
- Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq.Frontiers in physiology · 2016Article
- Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility.Frontiers in plant science · 2016Article
- Analysis of the Phialocephala subalpina Transcriptome during Colonization of Its Host Plant Picea abies.PloS one · 2016Article
- Transcriptome analysis of the white pine blister rust pathogen Cronartium ribicola: de novo assembly, expression profiling, and identification of candidate effectors.BMC genomics · 2015Article
- Analysis of gene expression changes in peach leaves in response to Plum pox virus infection using RNA-Seq.Molecular plant pathology · 2015Article
- Transcriptomic analysis of the phytopathogenic oomycete Phytophthora cactorum provides insights into infection-related effectors.BMC genomics · 2014Article
- High-resolution transcript profiling of the atypical biotrophic interaction between Theobroma cacao and the fungal pathogen Moniliophthora perniciosa.The Plant cell · 2014Article
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8 authors.
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Abstract
Lima bean is an important vegetable processing crop to the mid-Atlantic USA and is highly susceptible to the oomycete pathogen Phytophthora phaseoli, which causes downy mildew. Genetic resistance and fungicides are used to manage P. phaseoli and often fail. Currently, the molecular basis of the interaction between this host and pathogen is unknown. To begin to rectify this situation, we used Illumina RNA-Seq to perform a global transcriptome analysis comparing P. phaseoli growing in culture with P. phaseoli infecting its host. Sequence reads from a total of six libraries mapped to gene models from the closely related late blight pathogen, Phytophthora infestans, resulting in 10 427 P. phaseoli genes with homology to P. infestans and expression in at least one library. Of these, 318 P. phaseoli homologues matched known or putative virulence genes in P. infestans. Two well-studied classes, RxLRs and elicitins, were up-regulated in planta, whereas the reverse was true for another class, called crinklers. These results are discussed with respect to the differences and similarities in the pathogenicity mechanisms of P. phaseoli and P. infestans.
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