Evidence map›Paper›PMID 22110732›Full record

ArticlePloS one2011

Histological assessment of PAXgene tissue fixation and stabilization reagents.

Marcel Kap, Frank Smedts, Wolter Oosterhuis, Rosa Winther, Nanna Christensen, Bilge Reischauer, Christian Viertler, Daniel Groelz, Karl-Friedrich Becker, Kurt Zatloukal and 6 more

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Pathology and Biobanking.Turk patoloji dergisi · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Biospecimens and Biobanking in Global Health.Clinics in laboratory medicine · 2018
    Review
  15. Article
  16. Review
  17. Article
  18. Clinical impact of targeted amplicon sequencing for meningioma as a practical clinical-sequencing system.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Marcel KapDepartment of Pathology, Josephine Nefkens Institute, Erasmus MC, Rotterdam, The Netherlands. m.kap.1@erasmusmc.nl
Frank Smedts
Wolter Oosterhuis
Rosa Winther
Nanna Christensen
Bilge Reischauer
Christian Viertler
Daniel Groelz
Karl-Friedrich Becker
Kurt Zatloukal
Rupert Langer
Julia Slotta-Huspenina
Koppany Bodo
Bas de Jong
Uwe Oelmuller
Peter Riegman

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Within SPIDIA, an EC FP7 project aimed to improve pre analytic procedures, the PAXgene Tissue System (PAXgene), was designed to improve tissue quality for parallel molecular and morphological analysis. Within the SPIDIA project promising results were found in both genomic and proteomic experiments with PAXgene-fixed and paraffin embedded tissue derived biomolecules. But, for this technology to be accepted for use in both clinical and basic research, it is essential that its adequacy for preserving morphology and antigenicity is validated relative to formalin fixation. It is our aim to assess the suitability of PAXgene tissue fixation for (immuno)histological methods. Normal human tissue specimens (n = 70) were collected and divided into equal parts for fixation either with formalin or PAXgene. Sections of the obtained paraffin-embedded tissue were cut and stained. Morphological aspects of PAXgene-fixed tissue were described and also scored relative to formalin-fixed tissue. Performance of PAXgene-fixed tissue in immunohistochemical and in situ hybridization assays was also assessed relative to the corresponding formalin-fixed tissues. Morphology of PAXgene-fixed paraffin embedded tissue was well preserved and deemed adequate for diagnostics in most cases. Some antigens in PAXgene-fixed and paraffin embedded sections were detectable without the need for antigen retrieval, while others were detected using standard, formalin fixation based, immunohistochemistry protocols. Comparable results were obtained with in situ hybridization and histochemical stains. Basically all assessed histological techniques were found to be applicable to PAXgene-fixed and paraffin embedded tissue. In general results obtained with PAXgene-fixed tissue are comparable to those of formalin-fixed tissue. Compromises made in morphology can be called minor compared to the advantages in the molecular pathology possibilities.

Indexed as

Breast NeoplasmsErb-b2 Receptor Tyrosine KinasesFemaleFormaldehydeHumansImmunohistochemistryIndicators and ReagentsIn Situ HybridizationLaboratoriesNucleic AcidsParaffin EmbeddingProteomicsTissue FixationERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesFormaldehydeIndicators and ReagentsNucleic Acids

Identifiers

PMID22110732
PMCPMC3218013

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.