Evidence map›Paper›PMID 22110603›Full record

ArticlePloS one2011

The nuclear pore complex mediates binding of the Mig1 repressor to target promoters.

Nayan J Sarma, Thomas D Buford, Terry Haley, Kellie Barbara-Haley, George M Santangelo, Kristine A Willis

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Nayan J SarmaDepartment of Biological Sciences, The University of Southern Mississippi, Hattiesburg, Mississippi, United States of America.
Thomas D Buford
Terry Haley
Kellie Barbara-Haley
George M Santangelo
Kristine A Willis
University of Southern Mississippi · US

Funding

Movement of regulated genes to the nuclear peripheryR15GM083309 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI WILLIS, KRISTINE AMALEE · 2008 to 2011
$633k
NIGMS NIH HHS GM83309NIGMS NIH HHS R15 GM083309
6 · The paper itself

Abstract

All eukaryotic cells alter their transcriptional program in response to the sugar glucose. In Saccharomyces cerevisiae, the best-studied downstream effector of this response is the glucose-regulated repressor Mig1. We show here that nuclear pore complexes also contribute to glucose-regulated gene expression. NPCs participate in glucose-responsive repression by physically interacting with Mig1 and mediating its function independently of nucleocytoplasmic transport. Surprisingly, despite its abundant presence in the nucleus of glucose-grown nup120Δ or nup133Δ cells, Mig1 has lost its ability to interact with target promoters. The glucose repression defect in the absence of these nuclear pore components therefore appears to result from the failure of Mig1 to access its consensus recognition sites in genomic DNA. We propose that the NPC contributes to both repression and activation at the level of transcription.

Indexed as

Promoter Regions, GeneticActive Transport, Cell Nucleusbeta-FructofuranosidaseCell NucleusDNA, FungalGene Expression Regulation, FungalGenome, FungalGlucoseNuclear Pore Complex ProteinsProtein BindingProtein SubunitsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsbeta-FructofuranosidaseDNA, FungalGlucoseMIG1 protein, S cerevisiaeNuclear Pore Complex ProteinsProtein SubunitsRepressor ProteinsSaccharomyces cerevisiae ProteinsSUC2 protein, S cerevisiae

Identifiers

PMID22110603
PMCPMC3215702
OpenAlexW2011007445

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.