Evidence map›Paper›PMID 22110037›Full record

ArticleNucleic acids research2012

Saccharomyces Genome Database: the genomics resource of budding yeast.

J Michael Cherry, Eurie L Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T Chan, Karen R Christie, Maria C Costanzo, Selina S Dwight, Stacia R Engel and 12 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1,061 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,061citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1,061 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Defining thebioRxiv : the preprint server for biology · 2026
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1,001 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

J Michael CherryDepartment of Genetics, Stanford University, Stanford, CA 94305-5120, USA. cherry@stanford.edu
Eurie L Hong
Craig Amundsen
Rama Balakrishnan
Gail Binkley
Esther T Chan
Karen R Christie
Maria C Costanzo
Selina S Dwight
Stacia R Engel
Dianna G Fisk
Jodi E Hirschman
Benjamin C Hitz
Kalpana Karra
Cynthia J Krieger
Stuart R Miyasato
Rob S Nash
Julie Park
Marek S Skrzypek
Matt Simison
Shuai Weng
Edith D Wong

Funding

Gene Ontology ConsortiumP41HG002273 · NHGRI · JACKSON LABORATORY · PI BLAKE, JUDITH A · 2004 to 2011
$27.4M
GENOMIC DATABASE FOR THE YEAST SACCHAROMYCESP41HG001315 · NHGRI · STANFORD UNIVERSITY · PI CHERRY, J. MICHAEL · 1995 to 2010
$27.1M
InterMOD: integrated data and tools to support model organism researchR01HG004834 · NHGRI · UNIVERSITY OF CAMBRIDGE · PI CHERRY, J. MICHAEL, MICKLEM, GOS · 2009 to 2013
$2.8M
NHGRI NIH HHS P41 HG001315NHGRI NIH HHS P41 HG002273NHGRI NIH HHS R01 HG004834
6 · The paper itself

Abstract

The Saccharomyces Genome Database (SGD, http://www.yeastgenome.org) is the community resource for the budding yeast Saccharomyces cerevisiae. The SGD project provides the highest-quality manually curated information from peer-reviewed literature. The experimental results reported in the literature are extracted and integrated within a well-developed database. These data are combined with quality high-throughput results and provided through Locus Summary pages, a powerful query engine and rich genome browser. The acquisition, integration and retrieval of these data allow SGD to facilitate experimental design and analysis by providing an encyclopedia of the yeast genome, its chromosomal features, their functions and interactions. Public access to these data is provided to researchers and educators via web pages designed for optimal ease of use.

Indexed as

Databases, GeneticGenome, FungalGenes, FungalGenomicsHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPhenotypeSaccharomyces cerevisiaeSoftwareTerminology as Topic

Identifiers

PMID22110037
PMCPMC3245034

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.