ArticleNucleic acids research2012
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.
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Who cites it
21 citing papers in PubMed, 1 synthesis or guideline pooled it.
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- mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.Nucleic acids research · 2020Article
- Co-expressed Pathways DataBase for Tomato: a database to predict pathways relevant to a query gene.BMC genomics · 2017Article
- ALCOdb: Gene Coexpression Database for Microalgae.Plant & cell physiology · 2016Article
- Correcting Inconsistencies and Errors in Bacterial Genome Metadata Using an Automated Curation Tool in Excel (AutoCurE).Frontiers in bioengineering and biotechnology · 2015Article
- Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records.Standards in genomic sciences · 2014Article
- DDBJ progress report: a new submission system for leading to a correct annotation.Nucleic acids research · 2014Article
- BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data.Journal of biomedical semantics · 2014Article
- Coupling deep transcriptome analysis with untargeted metabolic profiling in Ophiorrhiza pumila to further the understanding of the biosynthesis of the anti-cancer alkaloid camptothecin and anthraquinones.Plant & cell physiology · 2013Article
- Reuse of public genome-wide gene expression data.Nature reviews. Genetics · 2013Review
- H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.Nucleic acids research · 2013Article
- ArrayExpress update--trends in database growth and links to data analysis tools.Nucleic acids research · 2013Article
- DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters.Nucleic acids research · 2013Article
- The International Nucleotide Sequence Database Collaboration.Nucleic acids research · 2013Article
- DDBJ new system and service refactoring.Nucleic acids research · 2013Article
- The IMGT/HLA database.Nucleic acids research · 2013Article
- The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.Nucleic acids research · 2012Article
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8 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: the 'DDBJ Omics Archive' (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. In this article, we describe major changes and improvements introduced to the DDBJ services, and the launch of two new resources: DOR and BioProject.
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