Evidence map›Paper›PMID 22102908›Full record

ArticlePloS one2011

Ago-2-mediated slicer activity is essential for anti-flaviviral efficacy of RNAi.

Shuiping Chen, Harendra S Chahar, Sojan Abraham, Haoquan Wu, Theodore C Pierson, Xiaozhong A Wang, N Manjunath

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Argonaute 2 is up-regulated in tissues of urothelial carcinoma of bladder.International journal of clinical and experimental pathology · 2014
    Article
  3. Review
  4. Article
  5. Article
  6. Evaluation of Argonaute protein as a predictive marker for human clear cell renal cell carcinoma.International journal of clinical and experimental pathology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Shuiping ChenDepartment of Biomedical Sciences, Center of Excellence in Infectious Disease Research, Paul L. Foster School of Medicine, Texas Tech University Health Sciences Center, El Paso, Texas, United States of America.
Harendra S Chahar
Sojan Abraham
Haoquan Wu
Theodore C Pierson
Xiaozhong A Wang
N Manjunath
Texas Tech University Health Sciences Center · USTexas Tech University · USNational Institute of Allergy and Infectious Diseases · USNorthwestern University · US

Funding

Mechanisms of Antibody-Mediated Neutralization of Flavivirus InfectionZIAAI000957 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PIERSON, THEODORE · 2009 to 2019
$7.1M
BROAD-SPECTRUM RNAi THERAPEUTICS FOR FLAVIVIRAL ENCEPHALITISU01AI075419 · NIAID · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI SWAMY, MANJUNATH NARASIMHA · 2007 to 2009
$2.9M
NIAID NIH HHS U01 AI075419NIAID NIH HHS U01AI075419
6 · The paper itself

Abstract

RNA interference can be mediated by fully complementary siRNA or partially complementary miRNA. siRNAs are widely used to suppress viral replication and the fully complementary siRNA bound Ago-2 in the RISC is known to degrade the target RNA. Although other argonaute proteins lacking slicer activity can also bind oligonucleotides with both si and miRNA structures, whether they can also contribute to antiviral effects is not entirely clear. We tested si and miRNA structured oligos for target repression in dual luciferase assays as well as for inhibition of Dengue and West Nile virus replication in ES cells expressing individual Ago proteins. In luciferase assays, both fully complementary and partially complementary oligos effectively repressed their targets in all individual Ago expressing cell lines, although the efficacy with fully complementary oligos was higher in Ago-2+ cells. However, partially complementary oligos had no effect on virus replication in any cell line, while fully complementary siRNAs were highly effective in Ago-2 expressing, but not in cells expressing other Ago proteins. This occurred irrespective of whether the target sequences were located in the coding region or 3'UTR of the virus. We conclude that Ago-2 slicer activity is essential for anti-viral efficacy of siRNAs and miRNA-mediated translational repression/transcript destabilization is too weak to suppress the abundantly expressed flaviviral proteins.

Indexed as

Gene SilencingVirus Replication3' Untranslated RegionsAntiviral AgentsArgonaute ProteinsCells, CulturedDengueDengue VirusEmbryonic Stem CellsHeLa CellsHumansLuciferasesMicroRNAsOligonucleotidesRNA InterferenceRNA, Small Interfering3' Untranslated RegionsAntiviral AgentsArgonaute ProteinsLuciferasesMicroRNAsOligonucleotidesRNA, Small Interfering

Identifiers

PMID22102908
PMCPMC3213142
OpenAlexW1970988939

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.