Evidence map›Paper›PMID 22102810›Full record

ArticlePLoS pathogens2011

Phytophthora sojae avirulence effector Avr3b is a secreted NADH and ADP-ribose pyrophosphorylase that modulates plant immunity.

Suomeng Dong, Weixiao Yin, Guanghui Kong, Xinyu Yang, Dinah Qutob, Qinghe Chen, Shiv D Kale, Yangyang Sui, Zhengguang Zhang, Daolong Dou and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 192 citations in OpenAlex.

  1. Article
  2. RT-qPCR-Based Estimation ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  3. Review
  4. Article
  5. Transposon sequencing revealsApplied and environmental microbiology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genomic and transcriptomic analyses ofFrontiers in microbiology · 2024
    Article
  14. Article
  15. Article
  16. Pangenomic analysis reveals plant NADProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Review
  18. Evasion of plant immunity by microbial pathogens.Nature reviews. Microbiology · 2022
    Review
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Suomeng DongCollege of Plant Protection, Nanjing Agricultural University, Nanjing, China.
Weixiao Yin
Guanghui Kong
Xinyu Yang
Dinah Qutob
Qinghe Chen
Shiv D Kale
Yangyang Sui
Zhengguang Zhang
Daolong Dou
Xiaobo Zheng
Mark Gijzen
Brett M Tyler
Yuanchao Wang
Nanjing Agricultural University · CNMolecular Sciences Software Institute · USAgriculture and Agri-Food Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants have evolved pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) and effector-triggered immunity (ETI) to protect themselves from infection by diverse pathogens. Avirulence (Avr) effectors that trigger plant ETI as a result of recognition by plant resistance (R) gene products have been identified in many plant pathogenic oomycetes and fungi. However, the virulence functions of oomycete and fungal Avr effectors remain largely unknown. Here, we combined bioinformatics and genetics to identify Avr3b, a new Avr gene from Phytophthora sojae, an oomycete pathogen that causes soybean root rot. Avr3b encodes a secreted protein with the RXLR host-targeting motif and C-terminal W and Nudix hydrolase motifs. Some isolates of P. sojae evade perception by the soybean R gene Rps3b through sequence mutation in Avr3b and lowered transcript accumulation. Transient expression of Avr3b in Nicotiana benthamiana increased susceptibility to P. capsici and P. parasitica, with significantly reduced accumulation of reactive oxygen species (ROS) around invasion sites. Biochemical assays confirmed that Avr3b is an ADP-ribose/NADH pyrophosphorylase, as predicted from the Nudix motif. Deletion of the Nudix motif of Avr3b abolished enzyme activity. Mutation of key residues in Nudix motif significantly impaired Avr3b virulence function but not the avirulence activity. Some Nudix hydrolases act as negative regulators of plant immunity, and thus Avr3b might be delivered into host cells as a Nudix hydrolase to impair host immunity. Avr3b homologues are present in several sequenced Phytophthora genomes, suggesting that Phytophthora pathogens might share similar strategies to suppress plant immunity.

Indexed as

Plant ImmunityAdenosine Diphosphate RiboseAllelesGenotypeGlycine maxMolecular Sequence DataMutationNADNicotianaNudix HydrolasesPhosphorylasesPhytophthoraPlant DiseasesPyrophosphatasesReactive Oxygen SpeciesVirulence FactorsAdenosine Diphosphate RiboseNADNudix HydrolasesPhosphorylasesPyrophosphatasesReactive Oxygen SpeciesVirulence Factors

Identifiers

PMID22102810
PMCPMC3213090
OpenAlexW2090595780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.