Evidence map›Paper›PMID 22102415›Full record

ArticleThe Journal of biological chemistry2012

ATP hydrolysis by RAD50 protein switches MRE11 enzyme from endonuclease to exonuclease.

Jerzy Majka, Brian Alford, Juan Ausio, Ron M Finn, Cynthia T McMurray

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Critical DNA damaging pathways in tumorigenesis.Seminars in cancer biology · 2022
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Stepwise 5' DNA end-specific resection of DNA breaks by the Mre11-Rad50-Xrs2 and Sae2 nuclease ensemble.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  9. Review
  10. Purification and Biophysical Characterization of the Mre11-Rad50-Nbs1 Complex.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. A network of allosterically coupled residues in the bacteriophage T4 Mre11-Rad50 complex.Protein science : a publication of the Protein Society · 2016
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jerzy MajkaLawrence Berkeley National Laboratory, Life Sciences Division, Berkeley, California 94720, USA.
Brian Alford
Juan Ausio
Ron M Finn
Cynthia T McMurray
Lawrence Berkeley National Laboratory · USUniversity of Victoria · CA

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Chemical FingerprintingR01NS060115 · NINDS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI POLYZOS, ARIS A · 2007 to 2024
$7.7M
TRAFFICKING DEFECTS IN HUNTINGTONS DISEASER01NS040738 · NINDS · MAYO CLINIC ROCHESTER · PI MCMURRAY, CYNTHIA THERESE · 2001 to 2009
$3.4M
Mismatch Repair and DNA expansionR01GM066359 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MCMURRAY, CYNTHIA THERESE · 2004 to 2011
$2.9M
Age of Onset and Huntingtons DiseaseR01NS062384 · NINDS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MCMURRAY, CYNTHIA THERESE · 2009 to 2010
$1.3M
NCI NIH HHS CA092584NCI NIH HHS P01 CA092584NIGMS NIH HHS GM066359NIGMS NIH HHS R01 GM066359NINDS NIH HHS NS060115NINDS NIH HHS NS062384NINDS NIH HHS NS40738NINDS NIH HHS R01 NS040738NINDS NIH HHS R01 NS060115NINDS NIH HHS R01 NS062384
6 · The paper itself

Abstract

MRE11-RAD50 is a key early response protein for processing DNA ends of broken chromosomes for repair, yet how RAD50 nucleotide dynamics regulate MRE11 nuclease activity is poorly understood. We report here that ATP binding and ATP hydrolysis cause a striking butterfly-like opening and closing of the RAD50 subunits, and each structural state has a dramatic functional effect on MRE11. RAD50-MRE11 has an extended conformation in solution when MRE11 is an active nuclease. However, ATP binding to RAD50 induces a closed conformation, and in this state MRE11 is an endonuclease. ATP hydrolysis opens the RAD50-MRE11 complex, and MRE11 maintains exonuclease activity. Thus, ATP hydrolysis is a molecular switch that converts MRE11 from an endonuclease to an exonuclease. We propose a testable model in which the open-closed transitions are used by RAD50-MRE11 to discriminate among DNA ends and drive the choice of recombination pathways.

Indexed as

Adenosine TriphosphateArchaeal ProteinsDNA, ArchaealDNA-Binding ProteinsEndodeoxyribonucleasesExodeoxyribonucleasesHydrolysisMultienzyme ComplexesProtein BindingProtein Structure, QuaternaryPyrococcus furiosusRecombination, GeneticAdenosine TriphosphateArchaeal ProteinsDNA, ArchaealDNA-Binding ProteinsEndodeoxyribonucleasesExodeoxyribonucleasesMre11 protein, archaealMultienzyme Complexes

Identifiers

PMID22102415
PMCPMC3268395
OpenAlexW1965379885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.