Evidence map›Paper›PMID 22102411›Full record

ArticleThe Journal of biological chemistry2012

Distal interleukin-1β (IL-1β) response element of human matrix metalloproteinase-13 (MMP-13) binds activator protein 1 (AP-1) transcription factors and regulates gene expression.

Adam C Schmucker, Jason B Wright, Michael D Cole, Constance E Brinckerhoff

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Trans-Cinnamaldehyde Inhibits IL-1BioMed research international · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Adam C SchmuckerDepartment of Biochemistry, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.
Jason B Wright
Michael D Cole
Constance E Brinckerhoff
Dartmouth College · US

Funding

The Southernearch Center for ALPD and CirrhosisP50AA011999 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ANNA S. GUKOVSKAYA · 1999 to 2026
$45.8M
Myc Oncogene Mutations and Polymorphisms in CancerR01CA080320 · NCI · PRINCETON UNIVERSITY · PI COLE, MICHAEL DAVID · 1999 to 2014
$4.6M
Invasive Behavior of Tumor Cells Producing Collagenase-1R01CA077267 · NCI · DARTMOUTH COLLEGE · PI BRINCKERHOFF, CONSTANCE E · 1999 to 2013
$2.6M
REGULATION OF COLLAGENASE GENE EXPRESSIONR37AR026599 · NIAMS · DARTMOUTH COLLEGE · PI BRINCKERHOFF, CONSTANCE E · 1999 to 2006
$1.9M
AUTOIMMUNITY &CONNECTIVE TISSUE BIOLOGY TRAININGT32AR007576 · NIAMS · DARTMOUTH COLLEGE · PI RIGBY, WILLIAM FREDERICK CARSON · 1994 to 2008
$1.7M
REGULATION OF METALLOPROTEINASE GENE EXPRESSIONR01AR026599 · NIAMS · DARTMOUTH COLLEGE · PI BRINCKERHOFF, CONSTANCE E · 1986 to 2011
$1.7M
NCI NIH HHS CA-080320NCI NIH HHS CA-77267NCI NIH HHS R01 CA077267NCI NIH HHS R01 CA080320NIAAA NIH HHS P50 AA011999NIAAA NIH HHS P50-AA-11999NIAMS NIH HHS R01 AR026599NIAMS NIH HHS R37 AR026599NIAMS NIH HHS T32 AR007576NIAMS NIH HHS T32-AR-007576
6 · The paper itself

Abstract

The collagenase matrix metalloproteinase-13 (MMP-13) plays an important role in the destruction of cartilage in arthritic joints. MMP-13 expression is strongly up-regulated in arthritis, largely because of stimulation by inflammatory cytokines such as IL-1β. Treatment of chondrocytes with IL-1β induces transcription of MMP-13 in vitro. IL-1β signaling converges upon the activator protein-1 transcription factors, which have been shown to be required for IL-1β-induced MMP-13 gene expression. Using chromatin immunoprecipitation (ChIP), we detected activator protein-1 binding within an evolutionarily conserved DNA sequence ∼20 kb 5' relative to the MMP-13 transcription start site (TSS). Also using ChIP, we detected histone modifications and binding of RNA polymerase II within this conserved region, all of which are consistent with transcriptional activation. Chromosome conformation capture indicates that chromosome looping brings this region in close proximity with the MMP-13 TSS. Finally, a luciferase reporter construct driven by a component of the conserved region demonstrated an expression pattern similar to that of endogenous MMP-13. These data suggest that a conserved region at 20 kb upstream from the MMP-13 TSS includes a distal transcriptional response element of MMP-13, which contributes to MMP-13 gene expression.

Indexed as

Interleukin-1betaCell Line, TumorChromosomes, HumanGene Expression Regulation, EnzymologicHistonesHumansMatrix Metalloproteinase 13Response ElementsRNA Polymerase IITranscription Factor AP-1HistonesIL1B protein, humanInterleukin-1betaMatrix Metalloproteinase 13MMP13 protein, humanRNA Polymerase IITranscription Factor AP-1

Identifiers

PMID22102411
PMCPMC3256917
OpenAlexW1998794534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.