Evidence map›Paper›PMID 22102410›Full record

ArticleThe Journal of biological chemistry2012

Binding with nucleic acids or glycosaminoglycans converts soluble protein oligomers to amyloid.

Jeremy Di Domizio, Ran Zhang, Loren J Stagg, Mihai Gagea, Ming Zhuo, John E Ladbury, Wei Cao

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. RNA tailing machinery drives amyloidogenic phase transition.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Amyloid-containing biofilms and autoimmunity.Current opinion in structural biology · 2022
    Review
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  7. Review
  8. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jeremy Di DomizioDepartment of Immunology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.
Ran ZhangDepartment of Immunology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.
Loren J StaggDepartment of Biochemistry and Molecular Biology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.
Mihai GageaDepartment of Veterinary Medicine and Surgery, University of Texas M. D. Anderson Cancer Center, Houston, Texas 77030.
Ming ZhuoDepartment of Immunology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.
John E LadburyDepartment of Biochemistry and Molecular Biology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030.
Wei CaoDepartment of Immunology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, 77030. Electronic address: wcao@mdanderson.org.
The University of Texas MD Anderson Cancer Center · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Receptors Of Plasmacytoid Dendritic Cells And Their LigandsR01AI074809 · NIAID · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CAO, WEI · 2007 to 2011
$1.9M
NCI NIH HHS CA016672NCI NIH HHS P30 CA016672NIAID NIH HHS AI074809NIAID NIH HHS R01 AI074809
6 · The paper itself

Abstract

Ample evidence suggests that almost all polypeptides can either adopt a native structure (folded or intrinsically disordered) or form misfolded amyloid fibrils. Soluble protein oligomers exist as an intermediate between these two states, and their cytotoxicity has been implicated in the pathology of multiple human diseases. However, the mechanism by which soluble protein oligomers develop into insoluble amyloid fibrils is not clear, and investigation of this important issue is hindered by the unavailability of stable protein oligomers. Here, we have obtained stabilized protein oligomers generated from common native proteins. These oligomers exert strong cytotoxicity and display a common conformational structure shared with known protein oligomers. They are soluble and remain stable in solution. Intriguingly, the stabilized protein oligomers interact preferentially with both nucleic acids and glycosaminoglycans (GAG), which facilitates their rapid conversion into insoluble amyloid. Concomitantly, binding with nucleic acids or GAG strongly diminished the cytotoxicity of the protein oligomers. EGCG, a small molecule that was previously shown to directly bind to protein oligomers, effectively inhibits the conversion to amyloid. These results indicate that stabilized oligomers of common proteins display characteristics similar to those of disease-associated protein oligomers and represent immediate precursors of less toxic amyloid fibrils. Amyloid conversion is potently expedited by certain physiological factors, such as nucleic acids and GAGs. These findings concur with reports of cofactor involvement with disease-associated amyloid and shed light on potential means to interfere with the pathogenic properties of misfolded proteins.

Indexed as

Protein MultimerizationAmyloidogenic ProteinsCarbodiimidesCatechinCell DeathCross-Linking ReagentsDNAGlycosaminoglycansHEK293 CellsHumansJurkat CellsMethylaminesProtein StabilityProtein Structure, QuaternaryRNASolubility1-(3-dimethylaminopropyl)-dimethylaminopropyl-ethylcarbodiimide hydrochlorideAmyloidogenic ProteinsCarbodiimidesCatechinCross-Linking ReagentsDNAepigallocatechin gallateGlycosaminoglycansMethylaminesRNA

Identifiers

PMID22102410
PMCPMC3249128
OpenAlexW2016996974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.