Evidence map›Paper›PMID 22100335›Full record

ArticleJournal of structural biology2012

Domain topology of nucleoporin Nup98 within the nuclear pore complex.

Guillaume Chatel, Sachin H Desai, Alexa L Mattheyses, Maureen A Powers, Birthe Fahrenkrog

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 64 citations in OpenAlex.

  1. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
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  19. Nucleoporin genes in human diseases.European journal of human genetics : EJHG · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Guillaume ChatelInstitute of Molecular Biology and Medicine, Université Libre de Bruxelles, Charleroi, Belgium.
Sachin H Desai
Alexa L Mattheyses
Maureen A Powers
Birthe Fahrenkrog
Emory University · USUniversité Libre de Bruxelles · BEUniversity of Basel · CH

Funding

ENNCF - Viral Vector CoreP30NS055077 · NINDS · EMORY UNIVERSITY · PI LEVEY, ALLAN I · 2008 to 2018
$6.8M
FUNCTIONAL ANALYSIS OF VERTEBRATE NUCLEAR TRANSPORTR01GM059975 · NIGMS · EMORY UNIVERSITY · PI POWERS, MAUREEN A. · 1999 to 2009
$2.4M
NIGMS NIH HHS R01 GM-059975NIGMS NIH HHS R01 GM059975NINDS NIH HHS P30 NS055077NINDS NIH HHS P30NS055077
6 · The paper itself

Abstract

Nuclear pore complexes (NPCs) facilitate selective transport of macromolecules across the nuclear envelope in interphase eukaryotic cells. NPCs are composed of roughly 30 different proteins (nucleoporins) of which about one third are characterized by the presence of phenylalanine-glycine (FG) repeat domains that allow the association of soluble nuclear transport receptors with the NPC. Two types of FG (FG/FxFG and FG/GLFG) domains are found in nucleoporins and Nup98 is the sole vertebrate nucleoporin harboring the GLFG-type repeats. By immuno-electron microscopy using isolated nuclei from Xenopus oocytes we show here the localization of distinct domains of Nup98. We examined the localization of the C- and N-terminal domain of Nup98 by immunogold-labeling using domain-specific antibodies against Nup98 and by expressing epitope tagged versions of Nup98. Our studies revealed that anchorage of Nup98 to NPCs through its C-terminal autoproteolytic domain occurs in the center of the NPC, whereas its N-terminal GLFG domain is more flexible and is detected at multiple locations within the NPC. Additionally, we have confirmed the central localization of Nup98 within the NPC using super resolution structured illumination fluorescence microscopy (SIM) to position Nup98 domains relative to markers of cytoplasmic filaments and the nuclear basket. Our data support the notion that Nup98 is a major determinant of the permeability barrier of NPCs.

Indexed as

AnimalsAntibodiesBiological TransportBlotting, WesternCell NucleusMicroscopy, ImmunoelectronNuclear PoreNuclear Pore Complex ProteinsOocytesProtein Structure, TertiaryXenopusAntibodiesnuclear pore complex protein 98Nuclear Pore Complex Proteins

Identifiers

PMID22100335
PMCPMC3418325
OpenAlexW2013284012

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.