Evidence map›Paper›PMID 22099115›Full record

ArticleEmerging infectious diseases2011

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.

Aleisha R Reimer, Gary Van Domselaar, Steven Stroika, Matthew Walker, Heather Kent, Cheryl Tarr, Deborah Talkington, Lori Rowe, Melissa Olsen-Rasmussen, Michael Frace and 10 more

Open access · diamondAbstract read
In one paragraph

Article in Emerging infectious diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 156 citations in OpenAlex.

  1. Article
  2. Article
  3. A comparative genomic and phenotypic study ofMicrobiology (Reading, England) · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Zebrafish Models for Pathogenic Vibrios.Journal of bacteriology · 2020
    Review
  11. Article
  12. Article
  13. ToxigenicProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. PulseNet: Entering the Age of Next-Generation Sequencing.Foodborne pathogens and disease · 2019
    Article
  16. Review
  17. Detection of Haitian ctxB7 & tcpA alleles inThe Indian journal of medical research · 2019
    Article
  18. Article
  19. Surveillance and Genomics of ToxigenicFrontiers in microbiology · 2019
    Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 3 countries.

Aleisha R ReimerPublic Health Agency of Canada, Winnipeg, Manitoba, Canada.
Gary Van Domselaar
Steven Stroika
Matthew Walker
Heather Kent
Cheryl Tarr
Deborah Talkington
Lori Rowe
Melissa Olsen-Rasmussen
Michael Frace
Scott Sammons
Georges Anicet Dahourou
Jacques Boncy
Anthony M Smith
Philip Mabon
Aaron Petkau
Morag Graham
Matthew W Gilmour
Peter Gerner-Smidt
V. cholerae Outbreak Genomics Task Force
Public Health Agency of Canada · CANational Institute for Communicable DiseasesCenters for Disease Control and Prevention · USNational Health Laboratory Service · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholera was absent from the island of Hispaniola at least a century before an outbreak that began in Haiti in the fall of 2010. Pulsed-field gel electrophoresis (PFGE) analysis of clinical isolates from the Haiti outbreak and recent global travelers returning to the United States showed indistinguishable PFGE fingerprints. To better explore the genetic ancestry of the Haiti outbreak strain, we acquired 23 whole-genome Vibrio cholerae sequences: 9 isolates obtained in Haiti or the Dominican Republic, 12 PFGE pattern-matched isolates linked to Asia or Africa, and 2 nonmatched outliers from the Western Hemisphere. Phylogenies for whole-genome sequences and core genome single-nucleotide polymorphisms showed that the Haiti outbreak strain is genetically related to strains originating in India and Cameroon. However, because no identical genetic match was found among sequenced contemporary isolates, a definitive genetic origin for the outbreak in Haiti remains speculative.

Indexed as

Genome, BacterialAfricaAllelesAsiaBacterial ProteinsCholeraCholera ToxinDisease OutbreaksElectrophoresis, Gel, Pulsed-FieldGene OrderHaitiHumansInterspersed Repetitive SequencesPhylogenyProphagesSequence Homology, Amino AcidBacterial ProteinsCholera Toxin

Identifiers

PMID22099115
PMCPMC3310578
OpenAlexW2114303542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.