Evidence map›Paper›PMID 22098603›Full record

ArticleLiver international : official journal of the International Association for the Study of the Liver2012

Gene-specific alterations of hepatic gene expression by ligand activation or hepatocyte-selective inhibition of retinoid X receptor-α signalling during inflammation.

Astrid Kosters, Feng Tian, Yu-Jui Yvonne Wan, Yvonne Yu-Jie Wan, Saul J Karpen

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Liver international : official journal of the International Association for the Study of the Liver, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Inflammation-associated upregulation of the sulfated steroid transporter Slc10a6 in mouse liver and macrophage cell lines.Hepatology research : the official journal of the Japan Society of Hepatology · 2016
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

  • Erratum issued
    Wan, Yvonne Yu-Jie [corrected to Wan, Yu-Jui Yvonne]
5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Astrid KostersDepartment of Pediatrics, Texas Children's Liver Center, Baylor College of Medicine, Houston, TX, USA.
Feng Tian
Yu-Jui Yvonne Wan
Yvonne Yu-Jie Wan
Saul J Karpen
Baylor College of Medicine · USTexas Children's Hospital · USUniversity of Kansas · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
MOLECULAR REGULATION OF HEPATIC TRANSPORTERSR01DK056239 · NIDDK · YALE UNIVERSITY · PI KARPEN, SAUL J. · 1999 to 2017
$4.8M
Retinoids Xenobiotic Metabolism and Tumor PromotionR01CA053596 · NCI · UNIVERSITY OF KANSAS MEDICAL CENTER · PI WAN, YU-JUI YVONNE · 1996 to 2014
$4.5M
Genome-Wide Analysis of RXR-alpha Binding In Mouse Liver Chromatin with ChIP-SEQRC1DK086577 · NIDDK · EMORY UNIVERSITY · PI KARPEN, SAUL J. · 2009 to 2010
$887k
NCI NIH HHS R01 CA053596NIDDK NIH HHS P30 DK056338NIDDK NIH HHS P30 DK56338NIDDK NIH HHS R01 DK056239NIDDK NIH HHS R01 DK56239NIDDK NIH HHS RC1 DK086577NIDDK NIH HHS RC1 DK86577
6 · The paper itself

Abstract

backgroundInflammation leads to transcriptional downregulation of many hepatic genes, particularly those activated by retinoid X receptor-α (RXRα) heterodimers. Inflammation-mediated reduction of nuclear RXRα levels is a main factor in reduced nuclear receptor (NR)-regulated hepatic gene expression, eventually leading to cholestasis and liver damage.

aimTo investigate roles for RXRα in hepatic gene expression during inflammation, using two complementary mouse models: ligand activation of RXRα, and in mice expressing hepatocyte-specific expression of RXRα missing its DNA-binding domain (DBD; hs-RxrαΔex4(-/-) ).

methodsTo activate RXRα, mice were gavage-fed with LG268 or vehicle for 5 days. To inhibit RXRα function, hs-RxrαΔex4(-/-) mice were used. All mice were injected intraperitoneally with lipopolysaccharides (LPS) or saline for 16 h prior to analysis of hepatic RNA, protein and NR-DNA binding.

resultsLG268 treatment attenuated the LPS-mediated reductions of several RXRα-regulated genes, coinciding with maintained RXRα occupancy in both Bsep and Ostβ promoters. Lacking full hepatocyte RXRα function (hs-RxrαΔex4(-/-) mice) led to enhancement of LPS-mediated changes in gene expression, but surprisingly, maintenance of RNA levels of some RXRα-regulated genes. Investigations revealed that hs-RxrαΔex4(-/-) hepatocytes expressed an internally truncated, approximately 44 kDa, RXRα-form. DNA-binding capacity of NR heterodimers was equivalent in wild-type and hs-RxrαΔex4(-/-) livers, but reduced by LPS in both. Chromatin immunoprecipitation quantitative PCR revealed that RXRα occupancy to the Bsep RXRα:Farnesoid X Receptor site was reduced, but not absent, in hs-RxrαΔex4(-/-) livers.

conclusionsThere are differential regulatory roles for hepatic RXRα, both in basal and inflammatory states, suggesting new and complex multidomain roles for RXRα in regulating hepatic gene expression. Moreover, there is an unexpected non-obligate role for the DBD of RXRα.

Indexed as

AnimalsCell NucleusDisease Models, AnimalGene ExpressionHepatocytesInflammationLigandsLipopolysaccharidesLiverMaleMiceMice, Inbred C57BLMice, KnockoutOrganic ChemicalsRetinoid X Receptor alphaSignal TransductionLG 268LigandsLipopolysaccharidesOrganic ChemicalsRetinoid X Receptor alpha

Identifiers

PMID22098603
PMCPMC3788689
OpenAlexW2040143703

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.