ArticleNucleic acids research2012
The BioSample Database (BioSD) at the European Bioinformatics Institute.
Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
38 citing papers in PubMed.
- aurora: a machine learning gwas tool for analyzing microbial habitat adaptation.Genome biology · 2025Article
- Data management in balance - a decade of balancing pragmatism, sustainability and innovation at plant research center IPK Gatersleben.Journal of integrative bioinformatics · 2025Article
- The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.Nucleic acids research · 2022Article
- Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.Database : the journal of biological databases and curation · 2021Article
- Classification of Homo sapiens gene behavior using linear discriminant analysis fused with minimum entropy mapping.Medical & biological engineering & computing · 2021Article
- Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.BMC genomics · 2021Article
- A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing.F1000Research · 2021Article
- Performance analysis of melanoma classifier using electrical modeling technique.Medical & biological engineering & computing · 2020Article
- Promoting best practice in nucleotide sequence data sharing.Scientific data · 2020Article
- The variable quality of metadata about biological samples used in biomedical experiments.Scientific data · 2019Article
- Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences.Briefings in bioinformatics · 2018Review
- Orchestrating differential data access for translational research: a pilot implementation.BMC medical informatics and decision making · 2017Article
- The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data.Nucleic acids research · 2017Article
- GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.Animal genetics · 2016Article
- Pathogen metadata platform: software for accessing and analyzing pathogen strain information.BMC bioinformatics · 2016Article
- Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research.European journal of human genetics : EJHG · 2016Article
- hPSCreg--the human pluripotent stem cell registry.Nucleic acids research · 2016Article
- The European Genome-phenome Archive of human data consented for biomedical research.Nature genetics · 2015Article
- Identifying novel biomarkers through data mining-a realistic scenario?Proteomics. Clinical applications · 2015Review
- Making proteomics data accessible and reusable: current state of proteomics databases and repositories.Proteomics · 2015Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
The BioSample Database (http://www.ebi.ac.uk/biosamples) is a new database at EBI that stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. The goals of the BioSample Database include: (i) recording and linking of sample information consistently within EBI databases such as ENA, ArrayExpress and PRIDE; (ii) minimizing data entry efforts for EBI database submitters by enabling submitting sample descriptions once and referencing them later in data submissions to assay databases and (iii) supporting cross database queries by sample characteristics. Each sample in the database is assigned an accession number. The database includes a growing set of reference samples, such as cell lines, which are repeatedly used in experiments and can be easily referenced from any database by their accession numbers. Accession numbers for the reference samples will be exchanged with a similar database at NCBI. The samples in the database can be queried by their attributes, such as sample types, disease names or sample providers. A simple tab-delimited format facilitates submissions of sample information to the database, initially via email to biosamples@ebi.ac.uk.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.