Evidence map›Paper›PMID 22095043›Full record

ArticlePlant physiology2012

The SigB σ factor regulates multiple salt acclimation responses of the cyanobacterium Synechocystis sp. PCC 6803.

Hanna-Leena Nikkinen, Kaisa Hakkila, Liisa Gunnelius, Tuomas Huokko, Maija Pollari, Taina Tyystjärvi

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 58 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hanna-Leena NikkinenDepartment of Biochemistry and Food Chemistry, Molecular Plant Biology, University of Turku, FIN-20014 Turku, Finland.
Kaisa Hakkila
Liisa Gunnelius
Tuomas Huokko
Maija Pollari
Taina Tyystjärvi
University of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Changing of principal σ factor in RNA polymerase holoenzyme to a group 2 σ factor redirects transcription when cyanobacteria acclimate to suboptimal environmental conditions. The group 2 sigma factor SigB was found to be important for the growth of the cyanobacterium Synechocystis sp. PCC 6803 in high-salt (0.7 m NaCl) stress but not in mild heat stress at 43°C although the expression of the sigB gene was similarly highly, but only transiently up-regulated at both conditions. The SigB factor was found to regulate many salt acclimation processes. The amount of glucosylglycerol-phosphate synthase, a key enzyme in the production of the compatible solute glucosylglycerol, was lower in the inactivation strain ΔsigB than in the control strain. Addition of the compatible solute trehalose almost completely restored the growth of the ΔsigB strain at 0.7 m NaCl. High-salt conditions lowered the chlorophyll and phycobilin contents of the cells while protective carotenoid pigments, especially zeaxanthin and myxoxanthophyll, were up-regulated in the control strain. These carotenoids were up-regulated in the ΔsigCDE strain (SigB is the only functional group 2 σ factor) and down-regulated in the ΔsigB strain under standard conditions. In addition, the HspA heat shock protein was less abundant and more abundant in the ΔsigB and ΔsigCDE strains, respectively, than in the control strain in high-salt conditions. Some cellular responses are common to heat and salt stresses, but pretreatment with mild heat did not protect cells against salt shock although protection against heat shock was evident.

Indexed as

Salt ToleranceAcclimatizationBacterial ProteinsCarotenoidsChlorophyllGlucosidesGlucosyltransferasesHeat-Shock ProteinsHeat-Shock ResponsePhycobilinsSigma FactorSynechocystisTrehaloseBacterial ProteinsCarotenoidsChlorophyllGlucosidesglucosylglycerolglucosylglycerol-phosphate synthaseGlucosyltransferasesHeat-Shock ProteinsHspA protein, bacteriaPhycobilinsSigB protein, BacteriaSigma FactorTrehalose

Identifiers

PMID22095043
PMCPMC3252095
OpenAlexW1990092032

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.