Evidence map›Paper›PMID 22093578›Full record

ArticleBMC evolutionary biology2011

Evolutionary and functional insights into Leishmania META1: evidence for lateral gene transfer and a role for META1 in secretion.

Vidhi Puri, Aneesh Goyal, Rajan Sankaranarayanan, Anton J Enright, Tushar Vaidya

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Vidhi PuriCentre for Cellular and Molecular Biology, Council for Scientific and Industrial Research, Uppal Road, Hyderabad - 500 007, Andhra Pradesh, India.
Aneesh Goyal
Rajan Sankaranarayanan
Anton J Enright
Tushar Vaidya
Council for Scientific and Industrial Research · ZAEuropean Bioinformatics Institute · GBSyngene International (India) · IN

Funding

Wellcome Trust 079643/Z/06/Z
6 · The paper itself

Abstract

backgroundLeishmania META1 has for long been a candidate molecule for involvement in virulence: META1 transcript and protein are up-regulated in metacyclic Leishmania. Yet, how META1 contributes to virulence remains unclear. We sought insights into the possible functions of META1 by studying its evolutionary origins.

resultsUsing multiple criteria including sequence similarity, nucleotide composition, phylogenetic analysis and selection pressure on gene sequence, we present evidence that META1 originated in trypanosomatids as a result of a lateral gene transfer of a bacterial heat-inducible protein, HslJ. Furthermore, within the Leishmania genome, META1 sequence is under negative selection pressure against change/substitution. Using homology modeling of Leishmania META1 based on solved NMR structure of HslJ, we show that META1 and HslJ share a similar structural fold. The best hit for other proteins with similar fold is MxiM, a protein involved in the type III secretion system in Shigella. The striking structural similarity shared by META1, HslJ and MxiM suggests a possibility of shared functions. Upon structural superposition with MxiM, we have observed a putative hydrophobic cavity in META1. Mutagenesis of select hydrophobic residues in this cavity affects the secretion of the secreted acid phosphatase (SAP), indicating META1's involvement in secretory processes in Leishmania.

conclusionsOverall, this work uses an evolutionary biology approach, 3D-modeling and site-directed mutagenesis to arrive at new insights into functions of Leishmania META1.

Indexed as

Gene Transfer, HorizontalAmino Acid SequenceBacterial ProteinsBase CompositionDNA, ProtozoanEvolution, MolecularLeishmaniaModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedPhylogenyProtein Structure, TertiaryProtozoan ProteinsSelection, GeneticSequence AlignmentSequence Analysis, DNABacterial ProteinsDNA, ProtozoanMeta1 protein, Leishmania majorProtozoan Proteins

Identifiers

PMID22093578
PMCPMC3270026
OpenAlexW2029284410

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.