Evidence map›Paper›PMID 22091701›Full record

ArticleThe journal of physical chemistry. A2012

Mechanism of S-oxygenation by a cysteine dioxygenase model complex.

Devesh Kumar, G Narahari Sastry, David P Goldberg, Sam P de Visser

Abstract read
In one paragraph

Article in The journal of physical chemistry. A, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Metal-Assisted Oxo Atom Addition to an Fe(III) Thiolate.Journal of the American Chemical Society · 2017
    Article
  8. Article
  9. Mono- and binuclear non-heme iron chemistry from a theoretical perspective.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Review
  10. Article
  11. Structures of Arg- and Gln-type bacterial cysteine dioxygenase homologs.Protein science : a publication of the Protein Society · 2015
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Sulfur oxygenation in biomimetic non-heme iron-thiolate complexes.Dalton transactions (Cambridge, England : 2003) · 2012
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Devesh KumarMolecular Modelling Group, Indian Institute of Chemical Technology, Hyderabad 500-607, India. dkclcre@yahoo.com
G Narahari Sastry
David P Goldberg
Sam P de Visser

Funding

Synthetic Models of N/S-Ligated Metal Centers in BiologyR01GM062309 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GOLDBERG, DAVID P · 2001 to 2010
$2.2M
NIGMS NIH HHS GM62309NIGMS NIH HHS R01 GM062309
6 · The paper itself

Abstract

In this work, we present the first computational study on a biomimetic cysteine dioxygenase model complex, [Fe(II)(LN(3)S)](+), in which LN(3)S is a tetradentate ligand with a bis(imino)pyridyl scaffold and a pendant arylthiolate group. The reaction mechanism of sulfur dioxygenation with O(2) was examined by density functional theory (DFT) methods and compared with results obtained for cysteine dioxygenase. The reaction proceeds via multistate reactivity patterns on competing singlet, triplet, and quintet spin state surfaces. The reaction mechanism is analogous to that found for cysteine dioxygenase enzymes (Kumar, D.; Thiel, W.; de Visser, S. P. J. Am. Chem. Soc. 2011, 133, 3869-3882); hence, the computations indicate that this complex can closely mimic the enzymatic process. The catalytic mechanism starts from an iron(III)-superoxo complex and the attack of the terminal oxygen atom of the superoxo group on the sulfur atom of the ligand. Subsequently, the dioxygen bond breaks to form an iron(IV)-oxo complex with a bound sulfenato group. After reorganization, the second oxygen atom is transferred to the substrate to give a sulfinic acid product. An alternative mechanism involving the direct attack of dioxygen on the sulfur, without involving any iron-oxygen intermediates, was also examined. Importantly, a significant energetic preference for dioxygen coordinating to the iron center prior to attack at sulfur was discovered and serves to elucidate the function of the metal ion in the reaction process. The computational results are in good agreement with experimental observations, and the differences and similarities of the biomimetic complex and the enzymatic cysteine dioxygenase center are highlighted.

Indexed as

BiomimeticsCatalysisCoordination ComplexesCrystallography, X-RayCysteine DioxygenaseFerrous CompoundsIminesModels, ChemicalModels, MolecularOxidation-ReductionOxygenPyridinesQuantum TheorySulfhydryl CompoundsSulfinic AcidsThermodynamicsCoordination ComplexesCysteine DioxygenaseFerrous CompoundsIminesOxygenPyridinesSulfhydryl CompoundsSulfinic Acids

Identifiers

PMID22091701
PMCPMC3267236

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.