Evidence map›Paper›PMID 22090426›Full record

ArticleNucleic acids research2012

Structural analysis of an eIF3 subcomplex reveals conserved interactions required for a stable and proper translation pre-initiation complex assembly.

Anna Herrmannová, Dalia Daujotyte, Ji-Chun Yang, Lucie Cuchalová, Fabrice Gorrec, Susan Wagner, István Dányi, Peter J Lukavsky, Leos Shivaya Valásek

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 73 citations in OpenAlex.

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  8. A dynamic compositional equilibrium governs mRNA recognition by eIF3.bioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Anna HerrmannováLaboratory of Regulation of Gene Expression, Institute of Microbiology ASCR, v.v.i., Videnska 1083, Prague, 142 20, Czech Republic.
Dalia Daujotyte
Ji-Chun Yang
Lucie Cuchalová
Fabrice Gorrec
Susan Wagner
István Dányi
Peter J Lukavsky
Leos Shivaya Valásek
Czech Academy of Sciences, Institute of Microbiology · CZMRC Laboratory of Molecular Biology · GB

Funding

Howard Hughes Medical InstituteMedical Research CouncilWellcome Trust 090812Wellcome Trust 090812/B/09/Z
6 · The paper itself

Abstract

Translation initiation factor eIF3 acts as the key orchestrator of the canonical initiation pathway in eukaryotes, yet its structure is greatly unexplored. We report the 2.2 Å resolution crystal structure of the complex between the yeast seven-bladed β-propeller eIF3i/TIF34 and a C-terminal α-helix of eIF3b/PRT1, which reveals universally conserved interactions. Mutating these interactions displays severe growth defects and eliminates association of eIF3i/TIF34 and strikingly also eIF3g/TIF35 with eIF3 and 40S subunits in vivo. Unexpectedly, 40S-association of the remaining eIF3 subcomplex and eIF5 is likewise destabilized resulting in formation of aberrant pre-initiation complexes (PICs) containing eIF2 and eIF1, which critically compromises scanning arrest on mRNA at its AUG start codon suggesting that the contacts between mRNA and ribosomal decoding site are impaired. Remarkably, overexpression of eIF3g/TIF35 suppresses the leaky scanning and growth defects most probably by preventing these aberrant PICs to form. Leaky scanning is also partially suppressed by eIF1, one of the key regulators of AUG recognition, and its mutant sui1(G107R) but the mechanism differs. We conclude that the C-terminus of eIF3b/PRT1 orchestrates co-operative recruitment of eIF3i/TIF34 and eIF3g/TIF35 to the 40S subunit for a stable and proper assembly of 48S pre-initiation complexes necessary for stringent AUG recognition on mRNAs.

Indexed as

Peptide Chain Initiation, TranslationalCodon, InitiatorCrystallography, X-RayEukaryotic Initiation Factor-1Eukaryotic Initiation Factor-3Gene DosageModels, MolecularMutationPhenotypeProtein Structure, TertiaryRibosome Subunits, Small, EukaryoticSaccharomyces cerevisiae ProteinsYeastsCodon, InitiatorEukaryotic Initiation Factor-1Eukaryotic Initiation Factor-3eukaryotic peptide initiation factor-1APrt1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTIF34 protein, S cerevisiae

Identifiers

PMID22090426
PMCPMC3300007
OpenAlexW2045090573

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.