Evidence map›Paper›PMID 22089346›Full record

ArticleDiagnostic molecular pathology : the American journal of surgical pathology, part B2011

Analysis of hematopoietic stem cell transplant engraftment: use of loss or gain of microsatellite alleles to identify residual hematopoietic malignancy.

Ming-Tseh Lin, Li-Hui Tseng, Katie Beierl, Shuko Harada, Michael J Hafez, James R Eshleman, Christopher D Gocke

Abstract readCase Reports
In one paragraph

Article in Diagnostic molecular pathology : the American journal of surgical pathology, part B, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ming-Tseh LinDepartment of Pathology, Johns Hopkins University School of Medicine, Johns Hopkins Hospital, Baltimore, Maryland, USA.
Li-Hui Tseng
Katie Beierl
Shuko Harada
Michael J Hafez
James R Eshleman
Christopher D Gocke
National Taiwan University · TWJohns Hopkins Medicine · USJohns Hopkins University · US

Funding

A Method for Rapid Long-range Direct HaplotypingR21HG004315 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI GOCKE, CHRISTOPHER D · 2007 to 2008
$451k
NHGRI NIH HHS R21 HG004315NHGRI NIH HHS R21HG004315
6 · The paper itself

Abstract

Polymorphic short tandem repeat (STR), or microsatellite, loci have been widely used to analyze chimerism status after allogeneic hematopoietic stem cell transplantation. The presence of a patient's DNA, as identified by STR analysis, may indicate residual or recurrent malignant disease or may represent normal hematopoiesis of patient origin. The ratio of patient-derived to donor-derived alleles is used to calculate the relative amount of patient cells (both benign and malignant) to donor cells. STRs on chromosomes known to be gained or lost in a patient's tumor are generally ignored because it is difficult to perform meaningful calculations of mixed chimerism. However, in this study, we present evidence that STR loci on gained or lost chromosomes are useful in distinguishing the benign or malignant nature of chimeric DNA. In the peripheral blood or bone marrow of 4 hematopoietic stem cell transplantation patients with leukemia or lymphoma, we identified tumor DNA on the basis of STR loci showing copy number alteration. We propose that a targeted evaluation of STR loci showing altered copy number in posttransplant chimerism analysis can provide evidence of residual cancer cells.

Indexed as

Hematopoietic Stem Cell TransplantationMicrosatellite RepeatsAdultAgedAllelesChild, PreschoolDNA, NeoplasmFemaleHumansLeukemiaLymphomaMaleMiddle AgedNeoplasm, ResidualDNA, Neoplasm

Identifiers

PMID22089346
PMCPMC3219907
OpenAlexW2078641269

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.