Evidence map›Paper›PMID 22087843›Full record

ArticleBMC molecular biology2011

Cell type-dependent gene regulation by Staufen2 in conjunction with Upf1.

Takashi Miki, Yasunao Kamikawa, Sadamu Kurono, Yuka Kaneko, Jun Katahira, Yoshihiro Yoneda

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Unwinding the roles of RNA helicase MOV10.Wiley interdisciplinary reviews. RNA · 2022
    Review
  2. UPF1 Governs Synaptic Plasticity through Association with a STAU2 RNA Granule.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Staufen-mediated mRNA decay.Wiley interdisciplinary reviews. RNA
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Takashi MikiDepartment of Frontier Bioscience, Graduate School of Frontier Biosciences, Osaka University, Yamadaoka, Suita, Osaka, Japan.
Yasunao Kamikawa
Sadamu Kurono
Yuka Kaneko
Jun Katahira
Yoshihiro Yoneda
Osaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelleddendritic mRNA transport machines. Although Stau2 is thought to be involved in the dendritic targeting of several mRNAs in neurons, the mechanism whereby Stau2 regulates these mRNAs is unknown. To elucidate the functions of Stau2, we screened for novel binding partners by affinity purification of GST-tagged Stau2 from 293F cells.

resultsThree RNA helicases, RNA helicase A, Upf1 and Mov10, were identified in Stau2-containing complexes. We focused our studies on Upf1, a key player in nonsense-mediated mRNA decay. Stau2 was found to bind directly to Upf1 in an RNA-independent manner in vitro. Tethering Stau2 to the 3'-untranslated region (UTR) of a reporter gene had little effect on its expression in HeLa cells. In contrast, when the same tethering assay was performed in 293F cells, we observed an increase in reporter protein levels. This upregulation of protein expression by Stau2 turned out to be dependent on Upf1. Moreover, we found that in 293F cells, Stau2 upregulates the reporter mRNA level in an Upf1-independent manner.

conclusionsThese results indicate that the recruitment of Stau2 alone or in combination with Upf1 differentially affects the fate of mRNAs. Moreover, the results suggest that Stau2-mediated fate determination could be executed in a cell type-specific manner.

Indexed as

Gene Expression Regulation3' Untranslated RegionsAnimalsCell LineCellsGenes, ReporterHeLa CellsHumansNonsense Mediated mRNA DecayProtein BindingRatsRNA-Binding ProteinsRNA HelicasesRNA, MessengerSpecies SpecificityTrans-Activators3' Untranslated RegionsRNA-Binding ProteinsRNA HelicasesRNA, MessengerStau2 protein, ratTrans-ActivatorsUPF1 protein, human

Identifiers

PMID22087843
PMCPMC3226675
OpenAlexW2051943500

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.