Evidence map›Paper›PMID 22084571›Full record

ArticleGene regulation and systems biology2011

Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni.

Raphael D Isokpehi, Ousman Mahmud, Andreas N Mbah, Shaneka S Simmons, Lívia Avelar, Rajendram V Rajnarayanan, Udensi K Udensi, Wellington K Ayensu, Hari H Cohly, Shyretha D Brown and 16 more

Open access · greenAbstract read
In one paragraph

Article in Gene regulation and systems biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Pathogens (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Universal Stress Proteins: From Gene to Function.International journal of molecular sciences · 2023
    Review
  11. Metabolic behavior for a mutantFrontiers in microbiology · 2023
    Article
  12. Review
  13. Article
  14. Genetic modification ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  15. Article
  16. Article
  17. Universal Stress Proteins as New Targets for Environmental and Therapeutic Interventions of Schistosomiasis.International journal of environmental research and public health · 2016
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 4 countries.

Raphael D IsokpehiCenter for Bioinformatics & Computational Biology, Department of Biology, Jackson State University, Jackson, Mississippi, USA.
Ousman Mahmud
Andreas N Mbah
Shaneka S Simmons
Lívia Avelar
Rajendram V Rajnarayanan
Udensi K Udensi
Wellington K Ayensu
Hari H Cohly
Shyretha D Brown
Centdrika R Dates
Sonya D Hentz
Shawntae J Hughes
Dominique R Smith-McInnis
Carvey O Patterson
Jennifer N Sims
Kelisha T Turner
Baraka S Williams
Matilda O Johnson
Taiwo Adubi
Judith V Mbuh
Chiaka I Anumudu
Grace O Adeoye
Bolaji N Thomas
Oyekanmi Nashiru
Guilherme Oliveira
Jackson State University · USUniversity of Lagos · NGUniversity at Buffalo, State University of New York · USUniversity of Buea · CMUniversity of Ibadan · NGUniversity of South Africa · ZA

Funding

VIRULENCE MECHANISMS IN ESCHERICHIA COLIP20RR016460 · NCRR · UNIV OF ARKANSAS FOR MED SCIS · PI HENSLEY, LORI · 2001 to 2011
$33.1M
TOUGALOO PROTEOMICSP20RR016476 · NCRR · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI SHEARER, GLEN · 2001 to 2011
$30.4M
TRANSCRIPTOMICS OF GIARDIA LAMBLIAG12RR013459 · NCRR · JACKSON STATE UNIVERSITY · PI TCHOUNWOU, PAUL B. · 1998 to 2011
$18.0M
Understanding Obesity In Relation to the Built EnvironmentP20MD006899 · NIMHD · JACKSON STATE UNIVERSITY · PI ANTOINE-LAVIGNE, DONNA A · 2012 to 2016
$5.3M
Using Mass Spectroscopy to Characterize Transcription Proteins and F2-IsoprostaneP20MD002725 · NIMHD · TOUGALOO COLLEGE · PI MAO, JINGHE · 2007 to 2011
$3.9M
Bioinformatics Programs at Minority InstitutionsT36GM095335 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI ROPELEWSKI, ALEXANDER J · 2011 to 2015
$3.2M
NCRR NIH HHS G12 RR013459NCRR NIH HHS P20 RR016460NCRR NIH HHS P20 RR016476NIGMS NIH HHS T36 GM095335NIMHD NIH HHS P20 MD002725NIMHD NIH HHS P20 MD006899
6 · The paper itself

Abstract

The draft nuclear genome sequence of the snail-transmitted, dimorphic, parasitic, platyhelminth Schistosoma mansoni revealed eight genes encoding proteins that contain the Universal Stress Protein (USP) domain. Schistosoma mansoni is a causative agent of human schistosomiasis, a severe and debilitating Neglected Tropical Disease (NTD) of poverty, which is endemic in at least 76 countries. The availability of the genome sequences of Schistosoma species presents opportunities for bioinformatics and genomics analyses of associated gene families that could be targets for understanding schistosomiasis ecology, intervention, prevention and control. Proteins with the USP domain are known to provide bacteria, archaea, fungi, protists and plants with the ability to respond to diverse environmental stresses. In this research investigation, the functional annotations of the USP genes and predicted nucleotide and protein sequences were initially verified. Subsequently, sequence clusters and distinctive features of the sequences were determined. A total of twelve ligand binding sites were predicted based on alignment to the ATP-binding universal stress protein from Methanocaldococcus jannaschii. In addition, six USP sequences showed the presence of ATP-binding motif residues indicating that they may be regulated by ATP. Public domain gene expression data and RT-PCR assays confirmed that all the S. mansoni USP genes were transcribed in at least one of the developmental life cycle stages of the helminth. Six of these genes were up-regulated in the miracidium, a free-swimming stage that is critical for transmission to the snail intermediate host. It is possible that during the intra-snail stages, S. mansoni gene transcripts for universal stress proteins are low abundant and are induced to perform specialized functions triggered by environmental stressors such as oxidative stress due to hydrogen peroxide that is present in the snail hemocytes. This report serves to catalyze the formation of a network of researchers to understand the function and regulation of the universal stress proteins encoded in genomes of schistosomes and their snail intermediate hosts.

Indexed as

expressed sequence tagsgene functiongene regulationprotein domainsSchistosomasequence analysisserial analysis of gene expressionuniversal stress proteins

Identifiers

PMID22084571
PMCPMC3201111
OpenAlexW2051421085

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.