Evidence map›Paper›PMID 22084076›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Mechanical stochastic tug-of-war models cannot explain bidirectional lipid-droplet transport.

Ambarish Kunwar, Suvranta K Tripathy, Jing Xu, Michelle K Mattson, Preetha Anand, Roby Sigua, Michael Vershinin, Richard J McKenney, Clare C Yu, Alexander Mogilner and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 199 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. MINFLUX reveals dynein stepping in live neurons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. ADP release can explain spatially-dependent kinesin binding times.bioRxiv : the preprint server for biology · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Ambarish KunwarDepartment of Neurobiology, Physiology and Behavior, University of California, Davis, CA 95616, USA.
Suvranta K Tripathy
Jing Xu
Michelle K Mattson
Preetha Anand
Roby Sigua
Michael Vershinin
Richard J McKenney
Clare C Yu
Alexander Mogilner
Steven P Gross
University of California, Irvine · USUniversity of California, Davis · USColumbia University · USUniversity of Utah · US

Funding

Modeling mitotic spindle assemblyR01GM068952 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI MOGILNER, ALEXANDER · 2003 to 2014
$4.4M
In vivo regulation of bi-directional transportR01GM064624 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GROSS, STEVEN P · 2002 to 2012
$2.8M
Modelling Intracellular TransportR01GM079156 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI YU, CLARE C · 2007 to 2011
$1.4M
NIGMS NIH HHS GM064624NIGMS NIH HHS GM068952NIGMS NIH HHS GM079156NIGMS NIH HHS R01 GM064624NIGMS NIH HHS R01 GM068952NIGMS NIH HHS R01 GM079156
6 · The paper itself

Abstract

Intracellular transport via the microtubule motors kinesin and dynein plays an important role in maintaining cell structure and function. Often, multiple kinesin or dynein motors move the same cargo. Their collective function depends critically on the single motors' detachment kinetics under load, which we experimentally measure here. This experimental constraint--combined with other experimentally determined parameters--is then incorporated into theoretical stochastic and mean-field models. Comparison of modeling results and in vitro data shows good agreement for the stochastic, but not mean-field, model. Many cargos in vivo move bidirectionally, frequently reversing course. Because both kinesin and dynein are present on the cargos, one popular hypothesis explaining the frequent reversals is that the opposite-polarity motors engage in unregulated stochastic tugs-of-war. Then, the cargos' motion can be explained entirely by the outcome of these opposite-motor competitions. Here, we use fully calibrated stochastic and mean-field models to test the tug-of-war hypothesis. Neither model agrees well with our in vivo data, suggesting that, in addition to inevitable tugs-of-war between opposite motors, there is an additional level of regulation not included in the models.

Indexed as

Lipid MetabolismModels, BiologicalStochastic ProcessesBiological TransportComputer SimulationKineticsMolecular Motor ProteinsMolecular Motor Proteins

Identifiers

PMID22084076
PMCPMC3223464
OpenAlexW2158190317

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.